View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_222 (Length: 250)
Name: NF8902A_low_222
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_222 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 40030209 - 40030351
Alignment:
| Q |
108 |
ttatgtttgtgttactgaatcaacctgaattccttaagttttgaatgtgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatg |
207 |
Q |
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| T |
40030209 |
ttatgtttgtgttactgaatcaacctgaattccttaagttttgaatgtgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatg |
40030308 |
T |
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| Q |
208 |
taattggatattggccatcctctttgttcacacatttaaatga |
250 |
Q |
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| T |
40030309 |
taattggatattggccatcctctttgttcacacacttaaatga |
40030351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 30925738 - 30925654
Alignment:
| Q |
155 |
tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcaca |
239 |
Q |
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| T |
30925738 |
tgtgcaggatcaaaaaactgggaattggtggcttgaatatggatctggaaacataattggatattggccatcctctttgttcaca |
30925654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 30916605 - 30916521
Alignment:
| Q |
155 |
tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcaca |
239 |
Q |
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| T |
30916605 |
tgtgtaggatagaaaaaatgggaattggtggcttgaatatggatctggaaacataattggatattggccatcctctttgttcaca |
30916521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 30905884 - 30905818
Alignment:
| Q |
173 |
tgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcaca |
239 |
Q |
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| T |
30905884 |
tgggaattggtggcttgaatttggatctggaaacataattggatattggccatcctctttgttcaca |
30905818 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 29211350 - 29211259
Alignment:
| Q |
156 |
gtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcacacatttaaa |
247 |
Q |
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| T |
29211350 |
gtgtaggatccaaagcatgggaattggtggcttgaatatggatctggaaacttaattggatattggccatcctccctattcacacacttaaa |
29211259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 29312538 - 29312622
Alignment:
| Q |
155 |
tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcaca |
239 |
Q |
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| T |
29312538 |
tgtgtaggatccaaatagtgggaattggtggcttgaatatggatctggaaattttcttggctattggccagccaccttgttcaca |
29312622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 29255319 - 29255403
Alignment:
| Q |
155 |
tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcaca |
239 |
Q |
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| T |
29255319 |
tgtgtaggatccaaggaatgggaattggtggcttgaatatggacttggaaaccctattggatactggccatcctctttgttcaca |
29255403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 29248692 - 29248776
Alignment:
| Q |
155 |
tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcaca |
239 |
Q |
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| T |
29248692 |
tgtgtaggatccaacgaatgggagttggtggcttgaatatggacttggaaaccctattggatactggccatcctctttgttcaca |
29248776 |
T |
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