View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_231 (Length: 248)

Name: NF8902A_low_231
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_231
NF8902A_low_231
[»] chr8 (1 HSPs)
chr8 (14-235)||(1729835-1730056)
[»] chr3 (4 HSPs)
chr3 (14-235)||(10787017-10787238)
chr3 (14-231)||(14688559-14688776)
chr3 (14-235)||(7360557-7360778)
chr3 (140-231)||(10157924-10158015)
[»] chr1 (2 HSPs)
chr1 (14-212)||(41375531-41375729)
chr1 (14-235)||(22080833-22081055)
[»] chr7 (2 HSPs)
chr7 (14-235)||(14329086-14329307)
chr7 (82-231)||(18166725-18166875)
[»] chr2 (4 HSPs)
chr2 (14-235)||(24954578-24954790)
chr2 (35-231)||(23621552-23621749)
chr2 (35-231)||(23195948-23196144)
chr2 (35-231)||(22643208-22643404)
[»] scaffold0040 (1 HSPs)
scaffold0040 (32-234)||(35865-36067)
[»] scaffold0051 (1 HSPs)
scaffold0051 (86-231)||(74369-74514)
[»] scaffold0897 (1 HSPs)
scaffold0897 (35-231)||(3942-4138)
[»] scaffold0319 (1 HSPs)
scaffold0319 (86-231)||(19338-19482)
[»] scaffold0108 (1 HSPs)
scaffold0108 (32-231)||(38791-38990)
[»] scaffold0064 (1 HSPs)
scaffold0064 (32-231)||(32748-32947)
[»] scaffold0022 (1 HSPs)
scaffold0022 (137-231)||(28605-28699)
[»] chr4 (2 HSPs)
chr4 (32-231)||(14562329-14562533)
chr4 (32-231)||(13284471-13284670)
[»] scaffold0304 (2 HSPs)
scaffold0304 (86-231)||(12379-12523)
scaffold0304 (86-231)||(18130-18274)
[»] chr6 (1 HSPs)
chr6 (32-198)||(19030303-19030469)
[»] scaffold0107 (1 HSPs)
scaffold0107 (90-171)||(9096-9177)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 1729835 - 1730056
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| |||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||    
T  1729835 tggagatcatattgctcgtcctcagcaaggcgataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggc 1729934  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttct 213  Q
    | |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  1729935 ggaccaactgaggaggcagtaatctcttataccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttct 1730034  T
Q  214 tgtctccaaaagagaccagaaa 235  Q
    ||||||||||||||||||||||    
T  1730035 tgtctccaaaagagaccagaaa 1730056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 10787017 - 10787238
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| ||||||||||| || |||||||||||||    
T  10787017 tggagatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc 10787116  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttct 213  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |    
T  10787117 gaaccaactgaggaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttt 10787216  T
Q  214 tgtctccaaaagagaccagaaa 235  Q
    ||||||||||||||||||||||    
T  10787217 tgtctccaaaagagaccagaaa 10787238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 14688776 - 14688559
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| |||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||| |   || ||||||||||||||||| |||||||| |    
T  14688776 tggagatcatattgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgac 14688677  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttct 213  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||    
T  14688676 ggaccaaccgaggaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcccgttatatctctgcgatagcgcgcgacgtttct 14688577  T
Q  214 tgtctccaaaagagacca 231  Q
    ||||||||||||||||||    
T  14688576 tgtctccaaaagagacca 14688559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 7360778 - 7360557
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| |||||||||||| |||||||| || ||||| ||||||||||| ||||||||| |||||| |  ||| ||||||||||||||||| |||||||| |    
T  7360778 tggagatcatattgctcatcctcagcagggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgac 7360679  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttct 213  Q
    | | ||||||||||||||||||||| || ||||||||||||||||| ||||||  ||||||| | |||||||| ||||| |||||||||||||||||||     
T  7360678 ggatcaaccgaggaggcagtaatcttttataccagcctgaaacgaaacggaaagaggtgtccacgcctgttatgtctctacgatagcgcgcgacgtttcg 7360579  T
Q  214 tgtctccaaaagagaccagaaa 235  Q
    |||||||||||||||| |||||    
T  7360578 tgtctccaaaagagacaagaaa 7360557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 10157924 - 10158015
Alignment:
Q  140 ttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    ||||||||||||||||||||||| || |||| |||||| || |||||||| |||||||| ||||| || ||  | |||||||||||||||||    
T  10157924 ttgtaccagcctgaaacgaagcgaaagtgggagtcccctcccgttatctccctgcgataacgcgcaacattcttcgtctccaaaagagacca 10158015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 41375729 - 41375531
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || ||| |||| |||||| ||||||||||||||||    
T  41375729 tggagatcatattgctcgtcctcagcagggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggc 41375630  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttc 212  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  41375629 gaaccaactaaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttc 41375531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 22080833 - 22081055
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| ||||||||| || || ||||| |||||||| |||||||||||||| ||||||||||||| |  ||| ||||||||||||||||| |||||||| |    
T  22080833 tggagatcatattgttcatcttcagcaggatgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgac 22080932  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcc-tgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttc 212  Q
    | |  ||| | |||||||||||||||||||||||||| | | |||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||    
T  22080933 ggattaactggggaggcagtaatctcttgtaccagccattagacgaagcggaaacgggtatccccgcctgttatctccctgcgatagcgcgcgacgtttc 22081032  T
Q  213 ttgtctccaaaagagaccagaaa 235  Q
    |||||||||||||||||||||||    
T  22081033 ttgtctccaaaagagaccagaaa 22081055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 14329307 - 14329086
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| |||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||| |  ||| ||||||||||||||||| |||||||| |    
T  14329307 tggagatcatattgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgac 14329208  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttct 213  Q
     || ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||     
T  14329207 aaatcaaccgaggaggcagtaatcttttataccagcctgaaacgaagcggaaacgggtgtccacacccgttatgtctctgcgatagcgcgcgacgtttcg 14329108  T
Q  214 tgtctccaaaagagaccagaaa 235  Q
    ||||||||||||||||||||||    
T  14329107 tgtctccaaaagagaccagaaa 14329086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 18166875 - 18166725
Alignment:
Q  82 acaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacct 181  Q
    ||||||||||||||||||||| |||||||| | ||  ||| | |||||||| || | ||||||||||||||| |||||||||||||||| |||||| |||    
T  18166875 acaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagcaaccgcttgtaccagcctgagacgaagcggaaatgggagtcccctcct 18166776  T
Q  182 gttatctctctgcgatagcgcgcgac-gtttcttgtctccaaaagagacca 231  Q
    |||||||| |||||||| ||||| ||  ||| |||||||||||||||||||    
T  18166775 gttatctccctgcgataacgcgcaacatttttttgtctccaaaagagacca 18166725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 24954578 - 24954790
Alignment:
Q  14 tggacatcatattgctcgtcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggc 113  Q
    |||| |||||||||||  |||||||| || ||||| |||||||||||||||||||||||||||| |  |||         ||||||||| |||||||| |    
T  24954578 tggagatcatattgcttatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgaca---------gttgttgcagaatcgacgac 24954668  T
Q  114 gaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttct 213  Q
    | | ||| ||||||||||||||||| || ||||||||||||||||||||||||  ||||||| | |||||||| ||||  ||||| |||||||||||||     
T  24954669 ggatcaatcgaggaggcagtaatcttttataccagcctgaaacgaagcggaaacaggtgtccacgcctgttatgtctcgacgatatcgcgcgacgtttcg 24954768  T
Q  214 tgtctccaaaagagaccagaaa 235  Q
    |||||||| |||||||||||||    
T  24954769 tgtctccagaagagaccagaaa 24954790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 23621749 - 23621552
Alignment:
Q  35 tcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaac-cgaggaggcagt 133  Q
    ||||| |||||| | ||| |||||||||| || |||||||| |    ||| ||||||||||||||||| |||||||| ||||  |||  | || |||||     
T  23621749 tcagcaggatgaaaccctagatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagc 23621650  T
Q  134 aatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    || ||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||| || ||| |||||||||||||||||||    
T  23621649 aacctcttgtaccagcatgaaacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagacca 23621552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 23196144 - 23195948
Alignment:
Q  35 tcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagta 134  Q
    ||||| |||||| | |||||||||||||| || | |||||| |    ||| ||||||||||||||||| |||||||| ||||  ||  | |||||||  |    
T  23196144 tcagcaggatgaaaccctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaaca 23196045  T
Q  135 atctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | |||||  |||||||||| || ||||||||||||| |||||| ||| ||||||| |||||||| ||||| || ||| |||||||||||||||||||    
T  23196044 acctcttaaaccagcctgagacaaagcggaaatgggagtcccctcctattatctccctgcgataacgcgcaacattttttgtctccaaaagagacca 23195948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 22643208 - 22643404
Alignment:
Q  35 tcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagta 134  Q
    ||||| |||||| | |||||||||||||| || | |||||| |    ||| |||||| |||||||||| |||||||| ||||  |||   ||||| || |    
T  22643208 tcagcaggatgaaaccctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagca 22643307  T
Q  135 atctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | ||||||||||||||| | |||||| |||||||||  ||||| |||||| |||| ||||||||  |||| || ||| |||||||||||||||||||    
T  22643308 acctcttgtaccagcctaagacgaagtggaaatgggactcccctcctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagacca 22643404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 35865 - 36067
Alignment:
Q  32 tcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggca 131  Q
    |||||||| |||||| | |||||||||||||||||||  ||||| ||    || ||||||||||||||||| ||||| || ||||  ||| | || ||||    
T  35865 tcctcagcaggatgaaaccctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggca 35964  T
Q  132 gtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | || |||||||||||||||||||||||||| || |||| |||||| ||||||||||| |||||||| ||||| || ||  |||||||||||||||||||    
T  35965 gcaacctcttgtaccagcctgaaacgaagcgaaagtgggagtcccctcctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagacca 36064  T
Q  232 gaa 234  Q
    |||    
T  36065 gaa 36067  T

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Target: scaffold0051 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 74369 - 74514
Alignment:
Q  86 ttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgtta 185  Q
    ||||||||||||||||| |||||||| || |  |||   ||||||||||| ||||||||||||||||| |||||||| ||| |||||||||| |||||||    
T  74369 ttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagtaacctcttgtaccagcctgagacgaagcgaaaacgggtgtcccctcctgtta 74468  T
Q  186 tctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    |||| |||||||||||||| || ||| | |||||||||||||||||    
T  74469 tctccctgcgatagcgcgcaacatttttcgtctccaaaagagacca 74514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0897 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0897
Description:

Target: scaffold0897; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 4138 - 3942
Alignment:
Q  35 tcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagta 134  Q
    ||||| |||||| | ||||||||||||||||| | |||||| |    ||| ||||||||||||||||| |||| ||| ||||| ||||| |||||||| |    
T  4138 tcagcaggatgaaaccctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagca 4039  T
Q  135 atctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | || |||||||||| ||| || |||| ||||||||  ||||| ||||||||||| |||||||| ||||| || ||| |||||||||||||||||||    
T  4038 acctattgtaccagcatgagacaaagcagaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagacca 3942  T

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Target: scaffold0319 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 19338 - 19482
Alignment:
Q  86 ttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgtta 185  Q
    ||||||||||||||||| |||||||| ||||  ||| | || ||||| || |||||||||||||||||||||||| |||||||||  ||||| |||||||    
T  19338 ttgtgccagttgttgcagaatcgacgacgaattaactgggg-ggcagcaacctcttgtaccagcctgaaacgaagtggaaatgggaatcccctcctgtta 19436  T
Q  186 tctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    |||| |||||||| ||||| || ||| |||||||||||||||||||    
T  19437 tctccctgcgataacgcgcaacattttttgtctccaaaagagacca 19482  T

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Target: scaffold0108 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 38791 - 38990
Alignment:
Q  32 tcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggca 131  Q
    |||||||| |||||| | |||||||||||||| || | |||||| |     || || |||||||||||||| |||||||||||||  ||| |||| ||||    
T  38791 tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca 38890  T
Q  132 gtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | || || |||||||||||||||| ||||||||||||||  ||| | ||| ||||||| |||||||| ||||| || ||| | |||||||||||||||||    
T  38891 gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca 38990  T

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Target: scaffold0064 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 32947 - 32748
Alignment:
Q  32 tcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggca 131  Q
    |||||||| |||||| | |||||||||||||| || | |||||| |     || || |||||||||||||| |||||||||||||  ||| |||| ||||    
T  32947 tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca 32848  T
Q  132 gtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | || || |||||||||||||||| ||||||||||||||  ||| | ||| ||||||| |||||||| ||||| || ||| | |||||||||||||||||    
T  32847 gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca 32748  T

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Target: scaffold0022 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 28605 - 28699
Alignment:
Q  137 ctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| ||||| || ||| | |||||||||||||||||    
T  28605 ctcttgtaccagcctgaaacgaagcgaaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca 28699  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 14562533 - 14562329
Alignment:
Q  32 tcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggagg-- 129  Q
    |||||||| |||||| | |||||||||||||| || | |||||| |     || ||||||||||||||||| |||||||||||||  ||| | || ||      
T  14562533 tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggg 14562434  T
Q  130 ---cagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaaga 226  Q
       ||| || || |||||||||||||||||||||||||||||||  ||||| ||| ||||||| |||||||| ||||| || ||| | ||||||||||||    
T  14562433 gggcagcaaccttttgtaccagcctgaaacgaagcggaaatgggaatcccctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaaga 14562334  T
Q  227 gacca 231  Q
    |||||    
T  14562333 gacca 14562329  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 13284670 - 13284471
Alignment:
Q  32 tcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggca 131  Q
    |||||||| ||||||   |||||||||||||||||||| ||||| |     || ||||||||||||||||| ||||| || ||||  |||   || ||||    
T  13284670 tcctcagcaggatgaattcctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggca 13284571  T
Q  132 gtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    | || |||||||||||||||||||||||||| |||| || |||||| || |||||||| |||||||| || || || ||  | |||||||||||||||||    
T  13284570 gcaacctcttgtaccagcctgaaacgaagcgaaaataggagtcccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagacca 13284471  T

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Target: scaffold0304 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 12523 - 12379
Alignment:
Q  86 ttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgtta 185  Q
    |||||||||||||| || |||||||| ||||  |||  ||| ||||| || ||||||||||||||| |||| |||| ||||||||  || || |||||||    
T  12523 ttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagcaacctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctgtta 12425  T
Q  186 tctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    |||| |||||||| ||||| || ||| |||||||||||||||||||    
T  12424 tctccctgcgataacgcgcaacattttttgtctccaaaagagacca 12379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 18274 - 18130
Alignment:
Q  86 ttgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgtta 185  Q
    |||||||||||||| || |||||||| ||||  |||  ||| ||||| || ||||||||||||||| |||| |||| ||||||||  || || |||||||    
T  18274 ttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagcaacctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctgtta 18176  T
Q  186 tctctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca 231  Q
    |||| |||||||| ||||| || ||| |||||||||||||||||||    
T  18175 tctccctgcgataacgcgcaacattttttgtctccaaaagagacca 18130  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 19030469 - 19030303
Alignment:
Q  32 tcctcagcgggatgataacctcgatagttgcgtctcaatccatccctgtaacaattgtgccagttgttgcaaaatcgacggcgaaccaaccgaggaggca 131  Q
    |||||||| |||||| | ||||||||||||||||| |  ||||| |     || ||||||||||||||||| |||||||| ||||  ||| |  | ||||    
T  19030469 tcctcagcaggatgaaaccctcgatagttgcgtcttagcccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactggaggggca 19030370  T
Q  132 gtaatctcttgtaccagcctgaaacgaagcggaaatgggtgtccccacctgttatctctctgcgata 198  Q
    | || ||||| ||||||||| |||||||||| || ||||  ||||| || ||||| || ||||||||    
T  19030369 gcaacctcttataccagcctaaaacgaagcgaaagtgggaatcccctcccgttatttccctgcgata 19030303  T

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Target: scaffold0107 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 9096 - 9177
Alignment:
Q  90 gccagttgttgcaaaatcgacggcgaaccaaccgaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaatgggt 171  Q
    ||||||||||||| ||||| || |||| |||| |||||||||  || ||||| |||| ||||||||||||||| || |||||    
T  9096 gccagttgttgcagaatcggcgacgaatcaactgaggaggcaacaaactcttataccggcctgaaacgaagcgaaagtgggt 9177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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