View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_232 (Length: 248)

Name: NF8902A_low_232
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_232
NF8902A_low_232
[»] chr5 (4 HSPs)
chr5 (17-242)||(16087858-16088083)
chr5 (17-116)||(16085061-16085160)
chr5 (18-83)||(14837106-14837170)
chr5 (36-94)||(3627786-3627845)
[»] chr8 (3 HSPs)
chr8 (18-155)||(5659749-5659887)
chr8 (34-155)||(38643570-38643691)
chr8 (20-92)||(21419011-21419084)
[»] chr1 (1 HSPs)
chr1 (17-117)||(19033617-19033717)
[»] chr4 (2 HSPs)
chr4 (20-155)||(14059118-14059255)
chr4 (181-225)||(26947369-26947413)
[»] chr3 (4 HSPs)
chr3 (20-132)||(53731143-53731256)
chr3 (181-238)||(14658272-14658329)
chr3 (181-225)||(14655015-14655059)
chr3 (20-116)||(53726677-53726774)
[»] chr2 (3 HSPs)
chr2 (20-132)||(7504925-7505038)
chr2 (20-124)||(26973292-26973397)
chr2 (20-116)||(26968772-26968869)
[»] scaffold0427 (1 HSPs)
scaffold0427 (36-155)||(5856-5968)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 16088083 - 16087858
Alignment:
Q  17 ctcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  16088083 ctcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttactgtttacgcatcaggtacaaca 16087984  T
Q  117 atcttggaatttatccgtgtaactgtaaccgcaagttaaagaccttcttctacaaggtgtcccatgaaatattggtggaggatgttgatagaactatgtc 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16087983 atcttggaatttatccctgtaactgtaaccgcaagttaaagaccttcttctacaaggtgtcccatgaaatattggtggaggatgttgatagaactatgtc 16087884  T
Q  217 agcagccaacttatacaacaatatta 242  Q
    ||||||||||||||||||||||||||    
T  16087883 agcagccaacttatacaacaatatta 16087858  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 16085160 - 16085061
Alignment:
Q  17 ctcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaaca 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  16085160 ctcgaaattgcggtggctgcgttgttatttgaagatgcggttgccgattattatttgaagttgtggtgttgcggttactgtttacgcatcaggtacaaca 16085061  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 14837170 - 14837106
Alignment:
Q  18 tcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggt 83  Q
    |||||||||  ||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  14837170 tcgaagttgtagtgactgagttgttatttgaagttgcggttgccggttattattt-aagttgcggt 14837106  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 3627845 - 3627786
Alignment:
Q  36 cgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttac 94  Q
    ||||||||||||||| |||||||||   |||||||||| |||||||||||||||||||||    
T  3627845 cgttgttatttgaagttgcggttgctacgttattatttaaagttgcggtgttgcggttac 3627786  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 5659749 - 5659887
Alignment:
Q  18 tcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaa 117  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  5659749 tcgaagttggggtggctacgttgttatttgaagttgcggttgcctgttattatttgaagttgcggtgttgcggttgctgtttacgcatcaggtacaacaa 5659848  T
Q  118 tcttggaatttatcc-gtgtaactgtaaccgcaagttaa 155  Q
    |||||||||||||||  | ||||||| ||||||||||||    
T  5659849 tcttggaatttatcctttataactgtgaccgcaagttaa 5659887  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 38643691 - 38643570
Alignment:
Q  34 tgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaatcttggaatttatcc 132  Q
    |||| ||||||| |||| ||||||||| | ||||||| || ||||||||||||||||||| | || |||||||   ||||||||||||||||||||||||    
T  38643691 tgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgcggtttacgcat---gtacaacaatcttggaatttatcc 38643595  T
Q  133 gtgt--aactgtaaccgcaagttaa 155  Q
     | |  |||||| ||||||||||||    
T  38643594 ttttaaaactgtgaccgcaagttaa 38643570  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21419084 - 21419011
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggtt 92  Q
    |||||||||| ||||||||||||||| |||| || | |||  | |||||||||| |||||| ||||||||||||    
T  21419084 gaagttgcggcggctgcgttgttattggaagttgtgattgttgcgttattatttaaagttgtggtgttgcggtt 21419011  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 19033717 - 19033617
Alignment:
Q  17 ctcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaaca 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||  ||||||||||||| || ||||||||||||||||||    
T  19033717 ctcgaagttgcggtggctgcgttgttatttgaagttgcggttgccggatattatttaaagttgtcgtgttgcggttactgtttacgcatcaggtacaaca 19033618  T
Q  117 a 117  Q
    |    
T  19033617 a 19033617  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 14059118 - 14059255
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaat 118  Q
    ||||||||| || ||||| ||||||| |||| ||||||||| | ||||||| || |||||||||||||| |||| | || ||| ||||||||||||||||    
T  14059118 gaagttgcgatgactgcgatgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgtggttgctgtttacacatcaggtacaacaat 14059217  T
Q  119 cttggaatttatcc-gtgtaactgtaaccgcaagttaa 155  Q
    ||||||||||||||  | ||||||| ||||||||||||    
T  14059218 cttggaatttatcctttataactgtgaccgcaagttaa 14059255  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26947413 - 26947369
Alignment:
Q  181 tgaaatattggtggaggatgttgatagaactatgtcagcagccaa 225  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  26947413 tgaagtattggtggaggatgttgatagaactatgtcagcaaccaa 26947369  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 53731256 - 53731143
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaat 118  Q
    |||||||||||||||||| |||| ||  ||| ||||||||| | ||||||| || ||||||||||||||||||| | || ||| ||| ||||||||||||    
T  53731256 gaagttgcggtggctgcggtgttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaacaat 53731157  T
Q  119 cttggaatttatcc 132  Q
    ||||||||||||||    
T  53731156 cttggaatttatcc 53731143  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 14658272 - 14658329
Alignment:
Q  181 tgaaatattggtggaggatgttgatagaactatgtcagcagccaacttatacaacaat 238  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  14658272 tgaagtattggtggaggatgttgatagaactatgtcagcagccaaattacacagcaat 14658329  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 14655015 - 14655059
Alignment:
Q  181 tgaaatattggtggaggatgttgatagaactatgtcagcagccaa 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  14655015 tgaagtattggtggaggatgttgatagaactatgtcagcagccaa 14655059  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 53726774 - 53726677
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaaca 116  Q
    ||||||||||||| |||| |||| ||  ||| ||||||||| | ||||||| || ||||||||||||||||||| | || ||| ||| ||||||||||    
T  53726774 gaagttgcggtggttgcggtgttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaaca 53726677  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 7505038 - 7504925
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaat 118  Q
    |||||||||||||||||| ||||||| |||| ||||||||| | ||||||| || |||||||||||||  |||| | || ||| ||||||||||||||||    
T  7505038 gaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttatggttgctgtttacacatcaggtacaacaat 7504939  T
Q  119 cttggaatttatcc 132  Q
    ||| ||||||||||    
T  7504938 cttagaatttatcc 7504925  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 26973397 - 26973292
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaat 118  Q
    |||||||||||||||||| ||||||| |||| ||||||||| | ||||||| || ||||||||||||||||||| | || ||| |||||||||||| |||    
T  26973397 gaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgctgtttacacatcaggtacaagaat 26973298  T
Q  119 cttgga 124  Q
    ||||||    
T  26973297 cttgga 26973292  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 26968869 - 26968772
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccgg-ttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaaca 116  Q
    |||||| ||||||||||  |||||||  ||| ||||||||| |  || ||| || ||||||||||||||||||| | || ||| ||||||||||||||    
T  26968869 gaagttccggtggctgctgtgttattcaaagttgcggttgctgcattgttacttaaagttgcggtgttgcggttgctgtttactcatcaggtacaaca 26968772  T

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Target: scaffold0427 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 5856 - 5968
Alignment:
Q  36 cgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtgtacgcatcaggtacaacaatcttggaatttatcc-gt 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  ||||| |||      ||| ||| ||||||||||||||||||||||||||  |    
T  5856 cgttgttatttgaagttgcggttgccggttattatttgaagttgcg--gttgctgtt------tacacattaggtacaacaatcttggaatttatccttt 5947  T
Q  135 gtaactgtaaccgcaagttaa 155  Q
     ||||||| ||||||||||||    
T  5948 ataactgtgaccgcaagttaa 5968  T

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