View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_237 (Length: 247)
Name: NF8902A_low_237
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_237 |
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| [»] scaffold0041 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 87361 - 87599
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
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| T |
87361 |
gagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
87460 |
T |
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| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcattcc |
208 |
Q |
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| T |
87461 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
87560 |
T |
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| Q |
209 |
atgcagagttgaagctataagatatatgactaatcatga |
247 |
Q |
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| T |
87561 |
atgtagagttgaagctataagatatatggctaatcatga |
87599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 95391 - 95615
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
95391 |
gagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccag |
95476 |
T |
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| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcattcc |
208 |
Q |
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| T |
95477 |
aagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattcc |
95576 |
T |
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| Q |
209 |
atgcagagttgaagctataagatatatgactaatcatga |
247 |
Q |
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| T |
95577 |
atgtagagttgaagatataagatatatggctaatcatga |
95615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 40878922 - 40878684
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878922 |
gagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
40878823 |
T |
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| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcattcc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40878822 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattcc |
40878723 |
T |
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| Q |
209 |
atgcagagttgaagctataagatatatgactaatcatga |
247 |
Q |
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| T |
40878722 |
atgtagagttgaagctataagatatatggctaatcatga |
40878684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 40870891 - 40870667
Alignment:
| Q |
9 |
gagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccag |
108 |
Q |
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| T |
40870891 |
gagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccag |
40870806 |
T |
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| Q |
109 |
aagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcattcc |
208 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
40870805 |
aagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattcc |
40870706 |
T |
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| Q |
209 |
atgcagagttgaagctataagatatatgactaatcatga |
247 |
Q |
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||| |||||||||| ||||||||||||| |||||||||| |
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| T |
40870705 |
atgtagagttgaagatataagatatatggctaatcatga |
40870667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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