View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_24 (Length: 438)

Name: NF8902A_low_24
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_24
NF8902A_low_24
[»] chr3 (10 HSPs)
chr3 (32-432)||(51942007-51942393)
chr3 (84-416)||(5155224-5155554)
chr3 (90-415)||(46478252-46478575)
chr3 (62-243)||(4582497-4582678)
chr3 (307-416)||(46550107-46550216)
chr3 (339-415)||(46469899-46469975)
chr3 (298-372)||(47398186-47398260)
chr3 (335-372)||(46490237-46490274)
chr3 (342-416)||(47414786-47414860)
chr3 (71-124)||(4614280-4614333)
[»] chr8 (2 HSPs)
chr8 (71-417)||(9677463-9677807)
chr8 (73-415)||(9693206-9693546)
[»] chr4 (4 HSPs)
chr4 (89-400)||(35160480-35160789)
chr4 (338-415)||(35154336-35154413)
chr4 (71-243)||(35154071-35154243)
chr4 (156-214)||(15555098-15555156)
[»] chr2 (3 HSPs)
chr2 (319-372)||(20143699-20143752)
chr2 (319-372)||(20169758-20169811)
chr2 (84-192)||(20154380-20154488)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 32 - 432
Target Start/End: Original strand, 51942007 - 51942393
Alignment:
Q  32 tcgtaagaacaatgtctcttcatgatcaacccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 131  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942007 tcgtaagaacaatgtctctccatgaccaacc-aaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 51942105  T
Q  132 tcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactg 231  Q
    |||| |||||| ||||||| ||||||||||||             ||| || ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51942106 tcgccattgtctctgcaagttgtgctcagcat-------------tctgattgtcccacaccgcagcaacttctcgacttcctacgatccaaatcaactg 51942192  T
Q  232 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcacctctccttcgccgatggtgtatgg 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51942193 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcacctctccttcgtcgatggtgtatgg 51942292  T
Q  332 atagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttcatgttcaaggtatata 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942293 atagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttcatgttcaaggtatata 51942392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 84 - 416
Target Start/End: Original strand, 5155224 - 5155554
Alignment:
Q  84 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 183  Q
    |||||||||||| ||||||  ||| ||| ||| || ||||| || ||||||| | |||| || |||| ||| || ||||| ||||||||||||||| | |    
T  5155224 atcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagg 5155323  T
Q  184 gtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgac 283  Q
    |||||||||  || || ||||| |||||||| |  |||||||| ||||| ||||||||| | || ||||| || ||||||||| |   ||||||| ||||    
T  5155324 gtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtc--gtgctcttcgac 5155421  T
Q  284 gctgcttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctg 383  Q
    |||||| |  | ||||||||||   ||||||||| | ||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||| ||||    
T  5155422 gctgctcccacaggtggacctcgattctccttcgtcaatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctctg 5155521  T
Q  384 actataaggccactttggcttccgttgatttca 416  Q
    | |||||||||||||||  ||| ||||||||||    
T  5155522 attataaggccactttgctttctgttgatttca 5155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 415
Target Start/End: Original strand, 46478252 - 46478575
Alignment:
Q  90 aaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccca 189  Q
    |||||| | ||||| ||| ||||||| ||||||||||| ||||| | | | || || |||| |||||| || || |||||| |||| ||| | |||||||    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  190 cacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgct 289  Q
    | |  || |||||| |  ||||||| | ||||||||| || ||||||||||||||| |||| |||||||| |||||  |  |   |||||||||||| ||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttcacagctcgtttccgtcatc--ctctccgacgcttct 46478449  T
Q  290 tctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactata 389  Q
     | |||||||| |||| |||||| |||| ||| ||||| ||| | ||  |||||||||||||||||||||||||| |||||||| ||||  || | | ||    
T  46478450 cccgccggtggtcctctcctctctttcgtcgacggtgtttgggttgatcaaaccctttctcttcaaccttccttccaacaaatcgtgtccactcatttta 46478549  T
Q  390 aggccactttggcttccgttgatttc 415  Q
    | ||  ||||| ||||||||||||||    
T  46478550 aagcagctttgtcttccgttgatttc 46478575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 4582678 - 4582497
Alignment:
Q  62 ccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagc 161  Q
    |||||||  |||||||||||||||||||||| || | ||||||||| ||||||| || ||||| || ||||| | | | || || |||| || |||||||    
T  4582678 ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc 4582579  T
Q  162 atgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 243  Q
    |||||||||||||||||| | || |||||| |  | || ||||| |||||||| |  |||||||||||||||||||||||||    
T  4582578 atgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaact 4582497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 46550216 - 46550107
Alignment:
Q  307 cctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttcc 406  Q
    |||||| |||| | ||||||  ||||| ||| |||||||||||||||||||||||||  || |||  ||| |  |||| ||||||||||||||||||||     
T  46550216 cctctctttcgtcaatggtgcgtggattgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccactttggcttca 46550117  T
Q  407 gttgatttca 416  Q
    ||||||||||    
T  46550116 gttgatttca 46550107  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 46469899 - 46469975
Alignment:
Q  339 aaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttc 415  Q
    ||||||||||||||||||||||||||||| |||  |||    |||| ||||| ||||||||||||||||||||||||    
T  46469899 aaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccactttggcttccgttgatttc 46469975  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 47398260 - 47398186
Alignment:
Q  298 tggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 372  Q
    |||||||| |||||| |||| | |||| || ||| | ||| ||||||||||||||||||||||||||||||||||    
T  47398260 tggacctcgcctctctttcgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 47398186  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 46490237 - 46490274
Alignment:
Q  335 gaaaaaaccctttctcttcaaccttccttcaaacaaat 372  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46490237 gaaaaaaccctttctcttcaaccttccttcaaacaaat 46490274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 47414860 - 47414786
Alignment:
Q  342 ccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttca 416  Q
    ||||||||||| |||||||||||||||||||| | |   |||| ||||||||| ||||| ||||||| |||||||    
T  47414860 ccctttctcttaaaccttccttcaaacaaatcgtctatcctgattataaggccgctttgtcttccgtagatttca 47414786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 4614333 - 4614280
Alignment:
Q  71 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacat 124  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||| || |||||    
T  4614333 agtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacat 4614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 417
Target Start/End: Complemental strand, 9677807 - 9677463
Alignment:
Q  71 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 170  Q
    |||||||||||   ||||||||||| | ||||||||| ||||||| |||||| |||||||||| | |||||| || |||| ||| ||||| || ||||||    
T  9677807 agtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgct 9677708  T
Q  171 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctat 270  Q
    ||||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  ||||||||||||| | ||| ||| || ||  ||||| |      
T  9677707 gctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctgtcc 9677608  T
Q  271 tgtgctctccgacgctgcttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaa 370  Q
    |   |||   || || |||||| ||||||| |||| |||||| |||||| ||||||||||| | || |||| |||||||||||||||||||||| || ||    
T  9677607 tc--ctcaaagatgcagcttcttccggtggtcctcgcctctctttcgccaatggtgtatgggtggagaaaaacctttctcttcaaccttccttccaagaa 9677510  T
Q  371 atcatgtcgtctgactataaggccactttggcttccgttgatttcat 417  Q
    | ||||||  | || |||||||||||| | ||||| |||||||||||    
T  9677509 accatgtctaccgattataaggccactctcgcttctgttgatttcat 9677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 415
Target Start/End: Complemental strand, 9693546 - 9693206
Alignment:
Q  73 tttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgc 172  Q
    |||||||||  |||||||||||| | ||||||||| ||||||| || ||  |||||||||| | |||||| || |||| ||| |||||||| |||||||     
T  9693546 tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgt 9693447  T
Q  173 tggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattg 272  Q
    ||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  ||||||||||||| | | | ||| || ||  ||| | |  |     
T  9693446 tggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaacttctttgtctctcatctcctttatgtcctc 9693347  T
Q  273 tgctctccgacgctgcttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 372  Q
      |||   |||||  ||||| ||||||| ||||||||||| |||||| ||||||| ||| |||| |||||||||||||||||||||||||||||| |||     
T  9693346 --ctcaaagacgcaacttcttccggtggtcctcacctctctttcgccaatggtgtgtgggtagagaaaaccctttctcttcaaccttccttcaaagaaac 9693249  T
Q  373 catgtcgtctgactataaggccactttggcttccgttgatttc 415  Q
    ||||||  |||| ||||||||  ||||| |||| |||||||||    
T  9693248 catgtctactgattataaggctgctttgtcttctgttgatttc 9693206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 400
Target Start/End: Original strand, 35160480 - 35160789
Alignment:
Q  89 caaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccc 188  Q
    ||||||| | ||||| ||| |||||||||| |||||||| ||||||| |||||| || |||| |||||||||||| ||| ||||||||||| | ||| |     
T  35160480 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttca 35160579  T
Q  189 acacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctc-gcctcacagcttgtttctctattgtgctctccgacgctg 287  Q
    ||||  || || ||||| |||||||| || | |||||| |||||||||||||||| |||| | ||| || |   ||||   ||  | |||   ||||||     
T  35160580 acacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact-cctcagtctctcatcaactttcc--atcatcctcaaagacgcta 35160676  T
Q  288 cttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgacta 387  Q
    ||||| ||||||| ||||||||||| |||| ||| ||||| ||| | ||||||||||||||||||||| ||||||||||||||||| ||||    || ||    
T  35160677 cttcttccggtggtcctcacctctctttcgtcgacggtgtttggctggaaaaaaccctttctcttcaatcttccttcaaacaaatcgtgtctgaagatta 35160776  T
Q  388 taaggccactttg 400  Q
    |||||||||||||    
T  35160777 taaggccactttg 35160789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 35154336 - 35154413
Alignment:
Q  338 aaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttc 415  Q
    ||||||||||||| |||||||||||||||||| ||| || |  | || || |||||||||||| |||| |||||||||    
T  35154336 aaaaccctttctcctcaaccttccttcaaacatatcgtgactaccgattacaaggccactttgtcttctgttgatttc 35154413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 35154071 - 35154243
Alignment:
Q  71 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 170  Q
    |||||||||||  |||||||||||| | ||||||||  |||||||||| || ||||| |||||||  ||||| || ||||  |||||    || ||||||    
T  35154071 agtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttgcaatcatcgct 35154170  T
Q  171 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 243  Q
    ||||||||| | ||| ||||||| || || |||||  ||||||| | || ||||||  |  ||||||||||||    
T  35154171 gctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 15555098 - 15555156
Alignment:
Q  156 ctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcct 214  Q
    |||||||| ||||||||||||||| | ||| |||||| ||| |||||||| ||||||||    
T  15555098 ctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 20143699 - 20143752
Alignment:
Q  319 cgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 372  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  20143699 cgatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 20143752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 20169811 - 20169758
Alignment:
Q  319 cgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 372  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  20169811 cgatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 20169758  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 20154380 - 20154488
Alignment:
Q  84 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 183  Q
    |||||||||||| ||||||  ||||||||||| || ||||| || ||||||| | |||| || |||| |||| ||||| | | ||||||||||||| | |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  184 gtcccacac 192  Q
    |||||||||    
T  20154480 gtcccacac 20154488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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