View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_242 (Length: 246)
Name: NF8902A_low_242
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_242 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 49124388 - 49124225
Alignment:
| Q |
25 |
tggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaa |
124 |
Q |
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| T |
49124388 |
tggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggagaa |
49124289 |
T |
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| Q |
125 |
gttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttgttatgaat |
188 |
Q |
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| T |
49124288 |
gttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 49124171 - 49124123
Alignment:
| Q |
181 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattctt |
229 |
Q |
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| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattctt |
49124123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
39 |
ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
87 |
Q |
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| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 18988475 - 18988416
Alignment:
| Q |
28 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
87 |
Q |
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| T |
18988475 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
18988416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
| Q |
28 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
87 |
Q |
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| T |
30341290 |
aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 23917049 - 23917108
Alignment:
| Q |
28 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
87 |
Q |
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|||||||||| |||| ||||||| ||||| |||||||||| | |||| |||||||||||| |
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| T |
23917049 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
23917108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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