View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_246 (Length: 245)
Name: NF8902A_low_246
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_246 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 19370106 - 19369894
Alignment:
| Q |
20 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370106 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
19370007 |
T |
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| Q |
120 |
tagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatca |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19370006 |
tagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaacagtactaaacaccatgacaattcagattgccgaatca |
19369907 |
T |
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| Q |
220 |
gtagatccaaata |
232 |
Q |
| |
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|||||| |||||| |
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| T |
19369906 |
gtagatacaaata |
19369894 |
T |
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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 49856712 - 49856577
Alignment:
| Q |
78 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
177 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||||||||| || |||| |
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| T |
49856712 |
tgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcagaat |
49856613 |
T |
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| Q |
178 |
tcaagagtactaaacaccatgacaattcagattgcc |
213 |
Q |
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| T |
49856612 |
tcaagagtactaagcatcatgaaaattcagagtgcc |
49856577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 39559581 - 39559717
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
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|||| |||||| ||||||||||||| ||||||||| |||| |||||| ||||||| ||||||||| |||||||||| |||||||| || |||| |||| |
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| T |
39559581 |
ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatttgctaaatatataatgcagaattcaa |
39559680 |
T |
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| Q |
182 |
gagtactaaacaccatgacaattcagattgccgaatc |
218 |
Q |
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||||| ||| |||||||||||||||| |||| |||| |
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| T |
39559681 |
gagtattaaggaccatgacaattcagagtgccaaatc |
39559717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 49868094 - 49867974
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
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|||| |||||||| ||||||||| ||||| |||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||| || |||| ||| |
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| T |
49868094 |
ccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaattcag |
49867995 |
T |
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| Q |
182 |
gagtactaaacaccatgacaa |
202 |
Q |
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||||||| | |||||||||| |
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| T |
49867994 |
gagtactgaggaccatgacaa |
49867974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 50815364 - 50815506
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50815364 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50815463 |
T |
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| Q |
182 |
gagtactaaacaccatgacaattcagattgccgaatcagtaga |
224 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| |
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| T |
50815464 |
gagtactaagcaccatgataattcagagtgcagaatccgtaga |
50815506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 50860500 - 50860358
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50860500 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50860401 |
T |
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| Q |
182 |
gagtactaaacaccatgacaattcagattgccgaatcagtaga |
224 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| |
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| T |
50860400 |
gagtactaagcaccatgataattcagagtgcagaatccgtaga |
50860358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 49973158 - 49973032
Alignment:
| Q |
87 |
atgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagta |
186 |
Q |
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|||||||||||| |||| |||||||||||||||||||||| || |||| | |||||| |||| |||||||||||||| ||||||| ||||||||| |
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| T |
49973158 |
atgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaattcaagagta |
49973059 |
T |
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| Q |
187 |
ctaaacaccatgacaattcagattgcc |
213 |
Q |
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|| | | |||||| |||||||| |||| |
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| T |
49973058 |
cttagcgccatgaaaattcagagtgcc |
49973032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 2216 - 2090
Alignment:
| Q |
91 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
190 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
2216 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
2117 |
T |
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| Q |
191 |
acaccatgacaattcagattgccgaat |
217 |
Q |
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||||||||||||||||| |||||||| |
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| T |
2116 |
gcaccatgacaattcagagtgccgaat |
2090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 3762 - 3636
Alignment:
| Q |
91 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
190 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
3762 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
3663 |
T |
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| Q |
191 |
acaccatgacaattcagattgccgaat |
217 |
Q |
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||||||||||||||||| |||||||| |
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| T |
3662 |
gcaccatgacaattcagagtgccgaat |
3636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 31211699 - 31211807
Alignment:
| Q |
78 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
177 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| || ||||| |
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| T |
31211699 |
tgtaccagattgtcttttatatcatcttacaacatgctcacttagaagcataagaagcataaactgtgagcttcagtttgcaaaatatatcatgcagaac |
31211798 |
T |
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| Q |
178 |
tcaagagta |
186 |
Q |
| |
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||| ||||| |
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|
| T |
31211799 |
tcaggagta |
31211807 |
T |
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