View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_260 (Length: 243)
Name: NF8902A_low_260
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_260 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 42744073 - 42743859
Alignment:
| Q |
9 |
gaaatgaagggaacatagagtggtttacacagaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggtaaactt |
108 |
Q |
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| T |
42744073 |
gaaatgaagggaacatagagtggtttacacaaaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggtaaactt |
42743974 |
T |
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| Q |
109 |
tattgtcttggattctctacctcttctgcattgtctttttgtctcatatcctagaaaacattttagtacatgtctggattaacggtgaaattgacaacaa |
208 |
Q |
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| T |
42743973 |
tattgtcttggattctctacctcttctgcattgtctttttgtctcatatcctagacaacattttagtacatgtctggattaacgttgaaattgacaacaa |
42743874 |
T |
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| Q |
209 |
aatcgcagttgattt |
223 |
Q |
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| T |
42743873 |
aatcgcagttgattt |
42743859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 42748797 - 42748704
Alignment:
| Q |
9 |
gaaatgaagggaacatagagtggtttacacagaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggt |
102 |
Q |
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||||||||||| ||||| | ||||| |||| ||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||| |
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| T |
42748797 |
gaaatgaaggggacatacaatggttcgcacaaaacactggctttatgttcgaaatagcaccctatttcaatgccattttggtttttattgaggt |
42748704 |
T |
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