View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_267 (Length: 241)

Name: NF8902A_low_267
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_267
NF8902A_low_267
[»] chr4 (13 HSPs)
chr4 (29-230)||(8654786-8654987)
chr4 (29-230)||(47541151-47541352)
chr4 (36-230)||(3129702-3129893)
chr4 (43-230)||(7662966-7663153)
chr4 (34-230)||(2631624-2631820)
chr4 (80-230)||(23873240-23873390)
chr4 (80-230)||(55298846-55298996)
chr4 (34-230)||(20675248-20675444)
chr4 (34-230)||(8486699-8486895)
chr4 (162-230)||(49926112-49926180)
chr4 (169-230)||(4524478-4524539)
chr4 (162-230)||(19647935-19648003)
chr4 (162-230)||(29553586-29553654)
[»] scaffold0029 (1 HSPs)
scaffold0029 (29-230)||(134567-134768)
[»] scaffold0002 (2 HSPs)
scaffold0002 (29-230)||(312394-312595)
scaffold0002 (29-230)||(327848-328049)
[»] chr5 (7 HSPs)
chr5 (1-230)||(10486605-10486834)
chr5 (34-230)||(34481173-34481369)
chr5 (113-230)||(587742-587859)
chr5 (35-230)||(35122425-35122620)
chr5 (172-213)||(23923092-23923133)
chr5 (182-219)||(27795720-27795757)
chr5 (182-230)||(31862819-31862867)
[»] chr3 (13 HSPs)
chr3 (29-230)||(49731645-49731846)
chr3 (29-230)||(30167057-30167258)
chr3 (34-230)||(2813218-2813414)
chr3 (34-230)||(29309634-29309830)
chr3 (34-230)||(6176196-6176392)
chr3 (106-230)||(9379323-9379447)
chr3 (155-230)||(23601999-23602074)
chr3 (163-230)||(25872955-25873022)
chr3 (155-212)||(8943596-8943653)
chr3 (182-221)||(48569905-48569944)
chr3 (156-230)||(14867625-14867699)
chr3 (184-222)||(46248738-46248776)
chr3 (169-221)||(18368808-18368860)
[»] chr1 (9 HSPs)
chr1 (29-230)||(21528387-21528592)
chr1 (34-228)||(36306012-36306206)
chr1 (34-230)||(37530792-37530988)
chr1 (80-230)||(32353061-32353211)
chr1 (34-230)||(48073149-48073345)
chr1 (146-230)||(48265548-48265632)
chr1 (155-230)||(30970447-30970522)
chr1 (156-230)||(16873332-16873406)
chr1 (162-230)||(25504839-25504907)
[»] chr7 (11 HSPs)
chr7 (29-230)||(15653418-15653619)
chr7 (29-181)||(46623968-46624120)
chr7 (34-230)||(13440279-13440475)
chr7 (34-230)||(12378446-12378639)
chr7 (155-230)||(45943077-45943152)
chr7 (98-221)||(43105546-43105669)
chr7 (156-231)||(41339750-41339825)
chr7 (156-230)||(19728713-19728787)
chr7 (184-222)||(27723973-27724011)
chr7 (197-230)||(46623931-46623964)
chr7 (162-230)||(45992802-45992870)
[»] chr8 (6 HSPs)
chr8 (34-230)||(7452578-7452774)
chr8 (34-230)||(16420728-16420924)
chr8 (156-221)||(12134563-12134628)
chr8 (178-230)||(19384572-19384624)
chr8 (173-219)||(13879344-13879390)
chr8 (171-219)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (29-230)||(45421745-45421947)
chr2 (29-230)||(13550350-13550551)
chr2 (80-230)||(43627725-43627875)
chr2 (34-226)||(26894330-26894522)
chr2 (34-226)||(26899769-26899961)
chr2 (131-230)||(31085452-31085551)
chr2 (131-230)||(33548098-33548197)
chr2 (29-149)||(13550884-13551004)
chr2 (172-231)||(36804137-36804196)
chr2 (172-230)||(22052853-22052911)
chr2 (183-231)||(36804352-36804400)
chr2 (173-219)||(40176905-40176951)
[»] scaffold0418 (1 HSPs)
scaffold0418 (43-230)||(7901-8088)
[»] chr6 (10 HSPs)
chr6 (80-230)||(25318080-25318230)
chr6 (80-230)||(26205574-26205724)
chr6 (34-230)||(23347185-23347381)
chr6 (80-230)||(15674051-15674205)
chr6 (175-230)||(33630323-33630378)
chr6 (197-230)||(1683266-1683299)
chr6 (156-219)||(4474935-4474998)
chr6 (155-221)||(5041753-5041819)
chr6 (162-230)||(19255866-19255934)
chr6 (162-230)||(33640144-33640212)
[»] scaffold0131 (1 HSPs)
scaffold0131 (29-104)||(4262-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (156-230)||(15490-15564)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 8654786 - 8654987
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654786 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 8654885  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8654886 tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat 8654985  T
Q  229 gt 230  Q
    ||    
T  8654986 gt 8654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 47541352 - 47541151
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||| ||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  47541352 ggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttc 47541253  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    ||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| |||| |||||||  ||||||||||||||||||||||||||||||||    
T  47541252 tgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttgat 47541153  T
Q  229 gt 230  Q
    ||    
T  47541152 gt 47541151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 3129702 - 3129893
Alignment:
Q  36 taggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat 135  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  3129702 taggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttctctattgat 3129801  T
Q  136 tcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||   || |||  |||||||||||||||| | ||||||| ||||||||||    ||||||||||||||||||||||||||||||||||    
T  3129802 tcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgtagggctttacttcttgatgt 3129893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 7662966 - 7663153
Alignment:
Q  43 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 142  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  143 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7663153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 2631820 - 2631624
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  2631820 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 2631721  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  2631720 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 2631624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 23873240 - 23873390
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 179  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  180 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    || |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23873390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 55298996 - 55298846
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 179  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  180 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    || |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 55298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 20675444 - 20675248
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||||||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||    
T  20675444 gataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttg 20675345  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| | |  ||||||||| ||||||||||||||||    
T  20675344 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttgatgt 20675248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 8486699 - 8486895
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||| | |||||| |   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   |||||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgatgt 8486895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 49926112 - 49926180
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || ||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttgatgt 49926180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 4524478 - 4524539
Alignment:
Q  169 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||||| ||||||||||| |  | |||| ||||||||||||||| || ||||||||    
T  4524478 cgtaggttgtgggtgtgggaggagaatgtcttagaggagtgtagggcttttctgcttgatgt 4524539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 19648003 - 19647935
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 19647935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 29553586 - 29553654
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  |||||||||||| ||||||| |||||||||| |||||||  |||||||    
T  29553586 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttactgtttgatgt 29553654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 134567 - 134768
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134567 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 134666  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  134667 tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat 134766  T
Q  229 gt 230  Q
    ||    
T  134767 gt 134768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 312394 - 312595
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312394 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 312493  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  312494 tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat 312593  T
Q  229 gt 230  Q
    ||    
T  312594 gt 312595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 327848 - 328049
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327848 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 327947  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  327948 tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat 328047  T
Q  229 gt 230  Q
    ||    
T  328048 gt 328049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10486605 - 10486834
Alignment:
Q  1 gttggagatggagctgattcgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaata 100  Q
    |||||||||||||||||| ||       ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  10486605 gttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaata 10486704  T
Q  101 agtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtt 200  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10486705 agttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgtt 10486804  T
Q  201 agcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||||||||||||||||||||||||    
T  10486805 agcggagtgtagggctttacttcttgatgt 10486834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 34481369 - 34481173
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||||||||||| |||||| || ||||  | ||| || || |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||    
T  34481369 gataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttgctctctgttg 34481270  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| |||||||||||||||||||||||||||    
T  34481269 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttgatgt 34481173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 587859 - 587742
Alignment:
Q  113 tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 212  Q
    ||||| ||||||| |||||   ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  213 ggctttacttcttgatgt 230  Q
    ||||||||||||||||||    
T  587759 ggctttacttcttgatgt 587742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 35122425 - 35122620
Alignment:
Q  35 ataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttga 134  Q
    |||||||||| |  ||||||||||||||||  || ||||||||| ||||||| ||| | ||||| ||    || ||||||||  |  |||| ||| ||||    
T  35122425 ataggtggtttgatgatgttccttttagtgagcggtttcgtaggttgtttgacttagctgagaacaaaaccatttctgtggcgaatatgttctctcttga 35122524  T
Q  135 ttcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
       ||||||| | || |||  |||||||||||||||||||||||||   |||||||||   || |||| ||||  |||||||||||| ||||||||    
T  35122525 cctggagcagggaggggttgggtggaggtggagacgtaggttgtgggcttgggaggagactttattagaggagcttagggctttactgcttgatgt 35122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  172 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 213  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  182 tgtgggaggaggacttgttagcggagtgtagggcttta 219  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 31862867 - 31862819
Alignment:
Q  182 tgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||||||| ||||| || ||||||  ||||||||||||||||||    
T  31862867 tgtgggaggaggagttgttggcagagtgtgtggctttacttcttgatgt 31862819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 49731645 - 49731846
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||    
T  49731645 ggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctc 49731744  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    ||||||| |||||||| |||| ||| ||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  49731745 tgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttgat 49731844  T
Q  229 gt 230  Q
    ||    
T  49731845 gt 49731846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 30167057 - 30167258
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||| | |||| ||||||||||||||| ||    
T  30167057 ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtggcagacttgttctc 30167156  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    |||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||    
T  30167157 tgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggactttacttcttgat 30167256  T
Q  229 gt 230  Q
    ||    
T  30167257 gt 30167258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 2813218 - 2813414
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  2813218 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 2813317  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  2813318 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 2813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 29309830 - 29309634
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |    
T  29309830 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcg 29309731  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||| ||||||||||||||    
T  29309730 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttgatgt 29309634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 6176196 - 6176392
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||| ||||||||||| |||||| || || |||||| | |||||||    
T  6176196 gataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttg 6176295  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| | || |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  6176296 attcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 6176392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 9379447 - 9379323
Alignment:
Q  106 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 205  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  206 agtgtagggctttacttcttgatgt 230  Q
    |||||||||| ||||| ||||||||    
T  9379347 agtgtagggcattactacttgatgt 9379323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 23602074 - 23601999
Alignment:
Q  155 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23601999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 25872955 - 25873022
Alignment:
Q  163 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| |||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgatgt 25873022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  155 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 212  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  182 tgtgggaggaggacttgttagcggagtgtagggctttact 221  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 14867625 - 14867699
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| |||||||| |||||||||  |||||||||||  || |||| |||||||||||| ||| | ||||||||    
T  14867625 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggccttaatacttgatgt 14867699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  184 tgggaggaggacttgttagcggagtgtagggctttactt 222  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  169 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 221  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 21528592 - 21528387
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||    
T  21528592 ggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctc 21528493  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggag----tgtagggctttacttct 224  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||| |||  ||||||||||||| ||||||||| |     ||||||||||||||||    
T  21528492 tgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttct 21528393  T
Q  225 tgatgt 230  Q
    ||||||    
T  21528392 tgatgt 21528387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 36306206 - 36306012
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||| ||||||||| | |||| ||||||||||||||| |||||||    
T  36306206 gataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcagacttgttctctgttg 36306107  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    ||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||| |||||||  |||||| |||||||||||||||||||||||||    
T  36306106 atttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggctttacttcttgat 36306012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 37530988 - 37530792
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||||||||||| |||||| || ||||  |  || || || |||||||||||||||||||||||  ||||| ||||||||||||| | |||||||    
T  37530988 gataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttg 37530889  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| |||||||||||||||||||||||||||    
T  37530888 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttgatgt 37530792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 32353061 - 32353211
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 179  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  180 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    || |||| ||||||| ||| |||  ||||||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttgatgt 32353211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 48073149 - 48073345
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  48073149 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 48073248  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||  |||||||||||| ||| |||  |||||| |||||||||||||||||||    
T  48073249 attcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttgatgt 48073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 48265548 - 48265632
Alignment:
Q  146 ggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttgatgt 48265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 30970447 - 30970522
Alignment:
Q  155 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| ||||||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttgatgt 30970522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 16873332 - 16873406
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||||||||||||||||||   |||||||||   || |||| ||||  |||||||||||| ||||||||    
T  16873332 gtggaggtggagacgtaggttgtgggcttgggaggagattttattagaggagcttagggctttactgcttgatgt 16873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 25504839 - 25504907
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 25504907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 15653418 - 15653619
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||| ||    
T  15653418 ggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctatggcagacttgttctc 15653517  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    |||||||| |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  15653518 tgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagggctttacttcttgat 15653617  T
Q  229 gt 230  Q
    ||    
T  15653618 gt 15653619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 46624120 - 46623968
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||| ||||||||| | |||||||||||||||||||| ||    
T  46624120 ggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtggcagacttgttctc 46624021  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggc 181  Q
    |||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624020 tgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 13440475 - 13440279
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  13440475 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 13440376  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   ||||||||||||||||||| || |||  |||||||||||| ||| |||  |||||| |||||||||||||||||||    
T  13440375 attcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttgatgt 13440279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 12378446 - 12378639
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| |||||||||||||| |  |||  || | || ||| |||||||||||||  ||||||||| | |||||||||||| | ||||| | ||||     
T  12378446 gataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgtta 12378545  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    | ||| ||| |||||| | ||||| |||| |||| || |||||||||| ||||||||||||  |||||||||||||||||||   ||||||||||||    
T  12378546 agtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc---acttcttgatgt 12378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 45943152 - 45943077
Alignment:
Q  155 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 45943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  98 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 197  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  198 gttagcggagtgtagggctttact 221  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 41339825 - 41339750
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 231  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||  ||||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttactatttgatgtc 41339750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 19728787 - 19728713
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| |||||||| |||||||||  |||||||||||  || |||| |||||||||||  ||||| ||||||||    
T  19728787 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggtcttactacttgatgt 19728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  184 tgggaggaggacttgttagcggagtgtagggctttactt 222  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 46623964 - 46623931
Alignment:
Q  197 tgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||| ||||||||||||||||||||||||||    
T  46623964 tgttagcagagtgtagggctttacttcttgatgt 46623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 45992870 - 45992802
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 45992802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 7452774 - 7452578
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  7452774 gataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagacttgttctctgttg 7452675  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||||||||||  || |||| |||||||||||||||||||||||||||    
T  7452674 atttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgtagggctttacttcttgatgt 7452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 16420728 - 16420924
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  16420728 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 16420827  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| |||||||||||||||| |||||    
T  16420828 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttctcgatgt 16420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 221  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 19384572 - 19384624
Alignment:
Q  178 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||| ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttgatgt 19384624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  173 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 219  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  171 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 219  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 45421947 - 45421745
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||| | |||| ||||||||||||||| ||    
T  45421947 ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtggcagacttgttctc 45421848  T
Q  129 tgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 227  Q
    |||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || ||||||||||||  |||||||||||||||||||||| ||||||||    
T  45421847 tgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtagggcttttcttcttga 45421748  T
Q  228 tgt 230  Q
    |||    
T  45421747 tgt 45421745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 13550551 - 13550350
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  ||||| |||||| | ||    
T  13550551 ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc 13550452  T
Q  129 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgat 228  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||| ||||||||| ||||||||    
T  13550451 tgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattcttgat 13550352  T
Q  229 gt 230  Q
    ||    
T  13550351 gt 13550350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 43627875 - 43627725
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 179  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  |||||| |   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  180 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    || |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 43627725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 26894330 - 26894522
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26894330 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26894429  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 226  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894430 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 26899769 - 26899961
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26899769 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26899868  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 226  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899869 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 31085452 - 31085551
Alignment:
Q  131 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||| ||||||||||| | | |||||||||||||| | |||||||| | ||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgatgt 31085551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 33548197 - 33548098
Alignment:
Q  131 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 33548098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 13551004 - 13550884
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 128  Q
    |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  ||||| |||||| | ||    
T  13551004 ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc 13550905  T
Q  129 tgttgattcggagcagtgggg 149  Q
    |||||||||||||||||||||    
T  13550904 tgttgattcggagcagtgggg 13550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 36804196 - 36804137
Alignment:
Q  172 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 231  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 22052911 - 22052853
Alignment:
Q  172 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||| |||| |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 22052853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 36804400 - 36804352
Alignment:
Q  183 gtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 231  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  173 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 219  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 8088 - 7901
Alignment:
Q  43 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 142  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  143 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 25318230 - 25318080
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 179  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  180 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    || |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 25318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 26205724 - 26205574
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 179  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  180 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    || |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 26205574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 23347185 - 23347381
Alignment:
Q  34 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 133  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  23347185 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttg 23347284  T
Q  134 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  23347285 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23347381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 15674205 - 15674051
Alignment:
Q  80 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt 175  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  ||||||    |   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  176 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| |||||||||||| ||| |||  ||||| ||||||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttgatgt 15674051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 33630378 - 33630323
Alignment:
Q  175 ttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||| || |||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggctttattttttgatgt 33630323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 1683299 - 1683266
Alignment:
Q  197 tgttagcggagtgtagggctttacttcttgatgt 230  Q
    ||||||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttgatgt 1683266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 219  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  155 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 221  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 19255934 - 19255866
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 19255866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 33640212 - 33640144
Alignment:
Q  162 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 33640144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 4262 - 4337
Alignment:
Q  29 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtt 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  4262 ggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt 4337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 15490 - 15564
Alignment:
Q  156 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 230  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||  |||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttactatttgatgt 15564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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