View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_27 (Length: 433)

Name: NF8902A_low_27
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_27
NF8902A_low_27
[»] chr4 (10 HSPs)
chr4 (7-283)||(50968201-50968477)
chr4 (48-126)||(6067669-6067747)
chr4 (52-125)||(34505290-34505363)
chr4 (48-126)||(31553694-31553772)
chr4 (315-372)||(50968491-50968548)
chr4 (51-125)||(4690134-4690208)
chr4 (52-126)||(33871041-33871115)
chr4 (52-125)||(52818059-52818132)
chr4 (52-126)||(6071145-6071218)
chr4 (388-427)||(50968549-50968588)
[»] chr8 (7 HSPs)
chr8 (48-129)||(40866295-40866376)
chr8 (48-126)||(7895149-7895227)
chr8 (49-125)||(44415934-44416010)
chr8 (48-130)||(42014301-42014383)
chr8 (52-126)||(24864608-24864682)
chr8 (52-126)||(38085946-38086020)
chr8 (51-124)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (48-126)||(3992803-3992881)
chr6 (48-126)||(7432416-7432494)
chr6 (48-126)||(7441933-7442011)
chr6 (48-126)||(7425621-7425699)
chr6 (51-124)||(7432982-7433055)
chr6 (48-126)||(7418530-7418608)
chr6 (48-126)||(7414581-7414659)
[»] chr3 (9 HSPs)
chr3 (52-126)||(29618312-29618386)
chr3 (52-130)||(41552096-41552174)
chr3 (52-126)||(11580203-11580277)
chr3 (52-124)||(1488013-1488085)
chr3 (52-124)||(2031252-2031324)
chr3 (52-124)||(35679472-35679544)
chr3 (52-126)||(35687869-35687943)
chr3 (52-126)||(52638656-52638730)
chr3 (79-126)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (51-130)||(3197563-3197642)
chr2 (48-133)||(34643000-34643085)
chr2 (52-132)||(39082462-39082542)
chr2 (52-127)||(24359790-24359865)
chr2 (52-126)||(4713110-4713184)
chr2 (48-126)||(8884447-8884525)
chr2 (51-126)||(36772397-36772472)
chr2 (51-126)||(36793511-36793586)
chr2 (51-126)||(37559326-37559401)
chr2 (52-126)||(42968150-42968224)
chr2 (52-126)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (51-128)||(37022194-37022271)
chr7 (46-126)||(30034301-30034381)
chr7 (48-128)||(46075148-46075228)
chr7 (52-130)||(25287956-25288034)
chr7 (48-124)||(46972135-46972211)
chr7 (52-130)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (50-131)||(23058051-23058132)
chr1 (48-127)||(30340907-30340986)
chr1 (52-128)||(37369512-37369588)
chr1 (50-124)||(23057679-23057753)
chr1 (50-124)||(23057864-23057938)
chr1 (50-124)||(23061980-23062054)
chr1 (48-130)||(30320741-30320823)
chr1 (66-119)||(23057568-23057621)
chr1 (66-119)||(23061869-23061922)
chr1 (51-124)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (51-126)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 50968201 - 50968477
Alignment:
Q  7 aaaaatatgtaataagcgaaaaaaggaatatttgaaattataaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctac 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968201 aaaaatatgtaataagcgaaaaaaggaatatttgaaattaaaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctac 50968300  T
Q  107 catttgagctacatccccatgttgaaattacattctcttgatcaataaaatattatgttatagaaaaaccggatagcatggttgcacgtagccgttcgtt 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50968301 catttgagctacatccccatgttgaaattacatcctcttgatcattaaaatattatgttatagaaaaaccggatagcatggttgcacatagccgttcgtt 50968400  T
Q  207 ttgcttcggaaataaacaccatactgggattgataaatgttttgtagagtcctctgacattggtaagaatcctagat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968401 ttgcttcggaaataaacaccatactgggattgataaatgttttgtagagtcctctgacattggtaagaatcctagat 50968477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 6067747 - 6067669
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067747 aaaatggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 6067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 34505363 - 34505290
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 125  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  34505363 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 34505290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 31553772 - 31553694
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31553772 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 31553694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 50968491 - 50968548
Alignment:
Q  315 ctgccaaacaggtattggcttcataatcacttttcatttttctcttgaagccttcaat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968491 ctgccaaacaggtattggcttcataatcacttttcatttttctcttgaagccttcaat 50968548  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 4690134 - 4690208
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 125  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  4690134 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccca 4690208  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 33871041 - 33871115
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  33871041 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 33871115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 52818132 - 52818059
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 125  Q
    ||||||||| ||| ||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52818132 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 52818059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 6071218 - 6071145
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||| ||||| |  ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  6071218 tggagatgcgggg-atcaaaccctgaacctcttgcatgcaaagcaagcgctctaccatttgagctacatccccat 6071145  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 50968549 - 50968588
Alignment:
Q  388 agttgtagcaaaaaattgtttgataaccttacgacttatt 427  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  50968549 agttgtagcaaaaaattgttcgataaccttaccacttatt 50968588  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 40866295 - 40866376
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866295 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 40866376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 7895149 - 7895227
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7895149 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 7895227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 44416010 - 44415934
Alignment:
Q  49 aaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 125  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  44416010 aaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 44415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 42014383 - 42014301
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 130  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  42014383 aaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacacccccaagttg 42014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 24864682 - 24864608
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24864682 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 24864608  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 38086020 - 38085946
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  38086020 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 38085946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 9963285 - 9963358
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9963285 atggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 9963358  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 3992803 - 3992881
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992803 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 3992881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 7432416 - 7432494
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7432416 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7432494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 7441933 - 7442011
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||| ||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7441933 aaaatggagttgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 7425621 - 7425699
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||||||| ||| | |||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  7425621 aaaatggagatgcggggtatcaatccccgtacctctcacatgctaagcgagcgctctaccatctgagctacatccccat 7425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 7432982 - 7433055
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    |||||||||||||| ||||| |||||| ||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7432982 atggagatgcggggtatcgatccccgtacctcttgcatgctaagcgagcgctctaccatctgagctacatcccc 7433055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 7418530 - 7418608
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||| |||| ||| | |||||| |||||| ||||| |||||||| || |||||| ||||||||||||||||    
T  7418530 aaaatggagatgtggggtatcaatccccgtccctctcacatgctaagcgagcactataccatctgagctacatccccat 7418608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 7414581 - 7414659
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||| |||  || ||||| |||| | |||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  7414581 aaaatggagttgcaaggtatcgatccccatacctctcacatgctaagcgagcgctctaccatctaagctacatccccat 7414659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 29618386 - 29618312
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618386 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 29618312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 41552174 - 41552096
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 130  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  41552174 tggagctgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaaccccatgttg 41552096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 11580277 - 11580203
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  11580277 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 11580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 1488085 - 1488013
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1488085 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 1488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 2031324 - 2031252
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  2031324 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 2031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 35679544 - 35679472
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  35679544 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 35679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 35687943 - 35687869
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||||| |||| | |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35687943 tggagatgcggggtatcgatccccatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35687869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 52638656 - 52638730
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||  || ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52638656 tggagatgcatggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatttgagctacatccccat 52638730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 35692264 - 35692217
Alignment:
Q  79 cctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35692264 cctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 3197642 - 3197563
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 130  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3197642 atggagatgcgggggatcaaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccaggttg 3197563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 34643000 - 34643085
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaaa 133  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34643000 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttgaaa 34643085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 39082542 - 39082462
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaa 132  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39082542 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgatgaa 39082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 24359865 - 24359790
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 127  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359865 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 24359790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 4713110 - 4713184
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713110 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 4713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 8884525 - 8884447
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8884525 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 8884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 36772397 - 36772472
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36772397 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 36793511 - 36793586
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36793511 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 37559326 - 37559401
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37559326 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37559401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 42968224 - 42968150
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42968224 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcaagcgctctaccatttgagctacatccccat 42968150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 36756170 - 36756244
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  36756170 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcactctaccatctgagctacatccccat 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 37022194 - 37022271
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 128  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37022194 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 37022271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 30034381 - 30034301
Alignment:
Q  46 ataaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30034381 ataaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 30034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 46075148 - 46075228
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 128  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  46075148 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 46075228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 25288034 - 25287956
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 130  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25288034 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttg 25287956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 46972135 - 46972211
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  46972135 aaaatggagacgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacgtcccc 46972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 34984430 - 34984508
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 130  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  34984430 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccttgttg 34984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 23058051 - 23058132
Alignment:
Q  50 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttga 131  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  23058051 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccttgttga 23058132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 30340907 - 30340986
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 127  Q
    ||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340907 aaaatggagatgcaggggatcaaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 30340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 37369512 - 37369588
Alignment:
Q  52 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 128  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37369512 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 37369588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 23057679 - 23057753
Alignment:
Q  50 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23057679 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23057753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 23057864 - 23057938
Alignment:
Q  50 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23057864 aatggagatgcagggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacaccccc 23057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 23061980 - 23062054
Alignment:
Q  50 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 124  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23061980 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23062054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 30320741 - 30320823
Alignment:
Q  48 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 130  Q
    ||||||||||||| ||| ||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30320741 aaaatggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatccccaagttg 30320823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 23057568 - 23057621
Alignment:
Q  66 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 119  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23057568 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23057621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 23061869 - 23061922
Alignment:
Q  66 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 119  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23061869 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23061922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 43066074 - 43065996
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaa-----gcgagcgctctaccatttgagctacatcccc 124  Q
    |||||||||||||| ||||| |||||| |||||||||||| ||     |||||||||||||||| ||||||||||||||    
T  43066074 atggagatgcggggtatcgagccccgtacctctcgcatgctaagtgatgcgagcgctctaccatatgagctacatcccc 43065996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 2626071 - 2626146
Alignment:
Q  51 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 126  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2626071 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 2626146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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