View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_276 (Length: 239)
Name: NF8902A_low_276
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_276 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 38884110 - 38883894
Alignment:
| Q |
4 |
catcagcaagaggatcataccatagactgttttcctgcccatcttatcaccaagccagccaaagaaaaggtgccctgaaagtgttccacagaaagctaca |
103 |
Q |
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| T |
38884110 |
catcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctaca |
38884011 |
T |
|
| Q |
104 |
ccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggata |
203 |
Q |
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| T |
38884010 |
ccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggata |
38883911 |
T |
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| Q |
204 |
cacagaacagatcatag |
220 |
Q |
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||||||||||||||||| |
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| T |
38883910 |
cacagaacagatcatag |
38883894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 38893288 - 38893086
Alignment:
| Q |
18 |
tcataccatagactgttttcctgcccatcttatcaccaagccagccaaagaaaaggtgccctgaaagtgttccacagaaagctacaccattcacagcagc |
117 |
Q |
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|||||||||| ||| | ||||| |||| ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| || ||||| || ||||| |
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| T |
38893288 |
tcataccatacactttcttcctacccaacttatcaccaagccagccaaagaaaagctgccctgtaagtgtaccacagaaagcaaccccattaaccgcagc |
38893189 |
T |
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| Q |
118 |
tgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatca |
217 |
Q |
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| T |
38893188 |
tgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatca |
38893089 |
T |
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| Q |
218 |
tag |
220 |
Q |
| |
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||| |
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| T |
38893088 |
tag |
38893086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 37315993 - 37316106
Alignment:
| Q |
22 |
accatagactgttttcctgcccatcttatcaccaagccagccaaagaaaaggtgccctgaaagtgttccacagaaagctacaccattcacagcagctgat |
121 |
Q |
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|||||| ||| |||| || ||||| || || |||||||| ||||||||||| || |||| || || ||||||| ||| |||||||| || || |||||| |
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| T |
37315993 |
accataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgat |
37316092 |
T |
|
| Q |
122 |
acattgggaggcaa |
135 |
Q |
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||||| |||||||| |
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| T |
37316093 |
acatttggaggcaa |
37316106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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