View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_277 (Length: 239)
Name: NF8902A_low_277
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_277 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 24362322 - 24362099
Alignment:
| Q |
10 |
agaaacagaaaaggaaagcgataccgctaactttcttacgttgtcgaggggaatctaatggtggcctccttccagtcttctgatttggccattcatccaa |
109 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24362322 |
agaaacagaaaatgaaagccatacctctaactttcttacgtggtcgaggggaatctaatggtggcctccttccagtcttttgatttggccattcatccaa |
24362223 |
T |
|
| Q |
110 |
aatttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttcct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24362222 |
aatttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttcct |
24362123 |
T |
|
| Q |
210 |
tcttcatatttaaacaacaccaaa |
233 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
24362122 |
tcttcataattaaacaacaccaaa |
24362099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 24354827 - 24354785
Alignment:
| Q |
149 |
atcatagtctatttctactgcattcttgccaagtatgtgtaca |
191 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24354827 |
atcatagtctatttctactgcattctggccaagtatgtgtaca |
24354785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 24344646 - 24344581
Alignment:
| Q |
85 |
tcttctgatttggccattcatccaaaatttgacatgattcatcatcactatgatcaacattttcat |
150 |
Q |
| |
|
|||||||||||||||||||||| ||||| | | ||||||||||||||||||| ||||||| |||| |
|
|
| T |
24344646 |
tcttctgatttggccattcatctaaaatctcaactgattcatcatcactatgaccaacattgtcat |
24344581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 24369842 - 24369807
Alignment:
| Q |
149 |
atcatagtctatttctactgcattcttgccaagtat |
184 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24369842 |
atcatagtctatttctaatgcattcttgccaagtat |
24369807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University