View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_294 (Length: 234)
Name: NF8902A_low_294
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_294 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 42550848 - 42551010
Alignment:
| Q |
20 |
actataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttg |
119 |
Q |
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| T |
42550848 |
actataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttg |
42550947 |
T |
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| Q |
120 |
gggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgcttt |
182 |
Q |
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| T |
42550948 |
gggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgcttt |
42551010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 42519182 - 42519075
Alignment:
| Q |
75 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggagg |
174 |
Q |
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| T |
42519182 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctggtgg |
42519083 |
T |
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| Q |
175 |
tgtgcttt |
182 |
Q |
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| T |
42519082 |
tgttcttt |
42519075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 1240992 - 1240854
Alignment:
| Q |
44 |
tactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgt |
143 |
Q |
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| T |
1240992 |
tactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgcaactagaatct |
1240893 |
T |
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| Q |
144 |
ttggaaggcgtctcaccatgatttctggaggtgtgcttt |
182 |
Q |
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| T |
1240892 |
ttggaagacatcttaccatgctctctggtggtgttcttt |
1240854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 4301932 - 4301875
Alignment:
| Q |
177 |
tgctttctcatgctttattcactcagcaagacactttgttcatgcaaactatttgata |
234 |
Q |
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| T |
4301932 |
tgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgata |
4301875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 18235432 - 18235287
Alignment:
| Q |
37 |
caaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaact |
136 |
Q |
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| T |
18235432 |
caaccagtactgcaaattcgacagccaaacgttaacattattcacatcctctttgtacgtggctgctcttatcgcatctcttggggcgtcgtggctaact |
18235333 |
T |
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| Q |
137 |
cgatcgtttggaaggcgtctcaccatgatttctggaggtgtgcttt |
182 |
Q |
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| T |
18235332 |
cgagtgcttggaagacgtatcaccatgctttctggtggtgttcttt |
18235287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 41972595 - 41972487
Alignment:
| Q |
74 |
ttgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggag |
173 |
Q |
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| T |
41972595 |
ttgtttacatcctctttgtatttggccgctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctggtg |
41972496 |
T |
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| Q |
174 |
gtgtgcttt |
182 |
Q |
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| T |
41972495 |
gtgttcttt |
41972487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 87370 - 87316
Alignment:
| Q |
180 |
tttctcatgctttattcactcagcaagacactttgttcatgcaaactatttgata |
234 |
Q |
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| T |
87370 |
tttctcatgctttattcaatctgcaagacacttttttcatgcaaactatttgata |
87316 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 33101385 - 33101328
Alignment:
| Q |
177 |
tgctttctcatgctttattcactcagcaagacactttgttcatgcaaactatttgata |
234 |
Q |
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| T |
33101385 |
tgctttctcatgctttattcaatatgcaagacgctttgttcatgcaaactatttgata |
33101328 |
T |
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