View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_303 (Length: 232)
Name: NF8902A_low_303
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_303 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 44211592 - 44211724
Alignment:
| Q |
93 |
taatactactttgcagcatgtggttttagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttttattcttgcttctaccggtcaa |
192 |
Q |
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| T |
44211592 |
taatactactttgcagcatgtggtgctagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttgtattcttgcttctaccggtcaa |
44211691 |
T |
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| Q |
193 |
agttgagacaacaatacggtttgaagggaaatg |
225 |
Q |
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| T |
44211692 |
agatgagacaacaatacggtttgaagggaaatg |
44211724 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 44211499 - 44211535
Alignment:
| Q |
14 |
gacaagggatccatttgtaagacacccattcatttta |
50 |
Q |
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| T |
44211499 |
gacaagggatccacttgtaagacacccattcatttta |
44211535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 44221720 - 44221804
Alignment:
| Q |
103 |
ttgcagcatgtggttttagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttttattcttgcttctaccg |
187 |
Q |
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| T |
44221720 |
ttgcagcttgtgctgtaagtggggctctatatacattaatttgttgtgtgacgggttgtggttgtttatactcatgcatctaccg |
44221804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 6495974 - 6496097
Alignment:
| Q |
102 |
tttgcagcatgtggttttagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttttattcttgcttctaccggtcaaagttgagac |
201 |
Q |
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| T |
6495974 |
tttgcagcatgtggtgctagtggggctttgtatacattgatttgctgtgtgattgggtgtccttgtttgtattcttgcttctaccggtcaaagatgcgac |
6496073 |
T |
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| Q |
202 |
aacaatacggtttgaagggaaatg |
225 |
Q |
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| T |
6496074 |
aacaatacggtttgaaaggaaatg |
6496097 |
T |
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