View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_306 (Length: 231)
Name: NF8902A_low_306
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_306 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 11860330 - 11860131
Alignment:
| Q |
19 |
acttcgcatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcaca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11860330 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcaca |
11860231 |
T |
|
| Q |
119 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11860230 |
agttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaa |
11860131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 11828195 - 11827999
Alignment:
| Q |
19 |
acttcgcatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcaca |
118 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
11828195 |
acttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcaca |
11828096 |
T |
|
| Q |
119 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacacc |
215 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11828095 |
agttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacacc |
11827999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 12039084 - 12038903
Alignment:
| Q |
30 |
tcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttg |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| | ||| |||||||| | ||| |||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
12039084 |
tcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcat--agct-ttgaaggtgttaaagatcttatcacaggttgatgttg |
12038988 |
T |
|
| Q |
130 |
tcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacac |
214 |
Q |
| |
|
||| || |||||| | |||||| ||||||||| | ||||||||||||||||||||||||| ||||| || ||||||| |||||| |
|
|
| T |
12038987 |
tcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttagctttctcaaacac |
12038903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 11902235 - 11902410
Alignment:
| Q |
27 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
126 |
Q |
| |
|
||||||||||| | |||||| |||| |||||||| ||||||||||||| ||| ||||| || ||||||||||| ||||||||| || || ||||||| |
|
|
| T |
11902235 |
tcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtaggga---cttgaaggtgttgaagatcttatcgcatgttgatg |
11902331 |
T |
|
| Q |
127 |
ttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgcttt |
205 |
Q |
| |
|
|||||| ||| ||||| || ||||| ||||||||||| || |||| |||||||||||||| || |||||||||||||| |
|
|
| T |
11902332 |
ttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgcttt |
11902410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 11731967 - 11731791
Alignment:
| Q |
27 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
126 |
Q |
| |
|
|||||||||||| | || || ||||||||||||| |||||||||||||||||| | | || ||||||||||| ||||||||| ||||| |||| | |
|
|
| T |
11731967 |
tcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgttgaagatcttatcacaggttggcg |
11731871 |
T |
|
| Q |
127 |
ttgtcacctttacctcatgcggaagctgagggttgttaatg---ttgtatggcaaaagaatggtccttagtttctttgct |
203 |
Q |
| |
|
| |||| ||| ||||| || |||||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
11731870 |
tcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
11731791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University