View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_31 (Length: 425)

Name: NF8902A_low_31
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_31
NF8902A_low_31
[»] chr7 (10 HSPs)
chr7 (45-409)||(38600390-38600742)
chr7 (219-409)||(37765466-37765657)
chr7 (165-243)||(37744439-37744516)
chr7 (169-244)||(37560050-37560124)
chr7 (309-409)||(37560187-37560287)
chr7 (27-91)||(37765884-37765948)
chr7 (309-409)||(37744287-37744387)
chr7 (97-126)||(7612350-7612379)
chr7 (97-126)||(30535470-30535499)
chr7 (131-183)||(37765664-37765717)
[»] chr5 (1 HSPs)
chr5 (98-128)||(10772029-10772059)
[»] chr2 (1 HSPs)
chr2 (93-126)||(28039462-28039495)
[»] chr1 (2 HSPs)
chr1 (75-121)||(47885133-47885181)
chr1 (97-126)||(48064200-48064229)
[»] chr8 (2 HSPs)
chr8 (98-126)||(24558743-24558771)
chr8 (98-126)||(44426538-44426566)
[»] chr3 (1 HSPs)
chr3 (98-126)||(55113555-55113583)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 45 - 409
Target Start/End: Original strand, 38600390 - 38600742
Alignment:
Q  45 tttattttgttgtgtctggaatcggaactgttcataagcacttatatcatgcgcttatgctataagctgcaaattaagttgtattgtaattgattgttta 144  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38600390 tttattttgttgtgtctggaatcggaactgttcataagc-------------gcttatgctataagctgcaaattaagttgtattgtaattgattgttta 38600476  T
Q  145 atttgtcacagacgcatccttgccagctttgtctactatactcaactgcaactgtgcaaatatactagaaagaagccatgtaagtgcaaatgtggcattc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38600477 atttgtcacagacgcatccttgccagctttgtctactatactcaactgcaactgtgcaaatatactagaaagaagccatgtaagtgcaaatgtggcattc 38600576  T
Q  245 tgtcttaatataacgaaaacactctgattcagaaccaaaatatgctaaacgatttgtttatggg-gtgtttccaggtcgagaatatgtgtgaagagtatc 343  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38600577 tgtcttaatataacgaaaacactctgattcagaactaaaatatgctaaacgatttgtttatgggtgtgtttccaggtcgagaatatgtgtgaagagtatc 38600676  T
Q  344 cctaaatattatacggaggatcatctaagactaaaattttctaagataggagaaataactgatgtc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38600677 cctaaatattatacggaggatcatctaagactaaaattttctaagataggagaaataactgatgtc 38600742  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 219 - 409
Target Start/End: Complemental strand, 37765657 - 37765466
Alignment:
Q  219 gccatgtaagtgcaaatgtggcattctgtcttaatataacgaaaacactctgattcagaaccaaaatatgctaaacgatttgtttatgg-ggtgtttcca 317  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| || ||| ||||||||||||| ||| |||||| || |||  |||||| ||    
T  37765657 gccatgtaagtgcaaatgtcacattctgtcttaatataacgaaaacactccgagtcaaaaccaaaatatgcgaaatgatttggttgtggttgtgttttca 37765558  T
Q  318 ggtcgagaatatgtgtgaagagtatccctaaatattatacggaggatcatctaagactaaaattttctaagataggagaaataactgatgtc 409  Q
    ||||||| ||||||||||||| |||||||||| ||  || |||||||   ||||||  | |||||||||||| |||||||||||||||||||    
T  37765557 ggtcgaggatatgtgtgaagaatatccctaaacatgttagggaggatggactaagaaaagaattttctaagaaaggagaaataactgatgtc 37765466  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 37744516 - 37744439
Alignment:
Q  165 tgccagctttgtctactatactcaactgcaactgtgcaaatatactagaaagaagccatgtaagtgcaaatgtggcatt 243  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||||    
T  37744516 tgccagttttgtctactatactcaactgcaactgtgcaattatactag-aaggagccatgtaagttcaaatgtggcatt 37744439  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 37560050 - 37560124
Alignment:
Q  169 agctttgtctactatactcaactgcaactgtgcaaatatactagaaagaagccatgtaagtgcaaatgtggcattc 244  Q
    |||||||||||||||||||||| ||||||||||||||||||| |  || || ||||||||||||||||||||||||    
T  37560050 agctttgtctactatactcaacggcaactgtgcaaatatacttg-gaggagacatgtaagtgcaaatgtggcattc 37560124  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 37560187 - 37560287
Alignment:
Q  309 gtgtttccaggtcgagaatatgtgtgaagagtatccctaaatattatacggaggatcatctaagactaaaattttctaagataggagaaataactgatgt 408  Q
    |||||||||||||||| ||||||||||||| | |||||||||||  |||||| ||||  || |||  | |||||||| ||| ||||||||||||||||||    
T  37560187 gtgtttccaggtcgaggatatgtgtgaagaatctccctaaatatgttacggaagatcgactgagagcacaattttctcagaaaggagaaataactgatgt 37560286  T
Q  409 c 409  Q
    |    
T  37560287 c 37560287  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 37765948 - 37765884
Alignment:
Q  27 gtaagttcgtctcatccatttattttgttgtgtctggaatcggaactgttcataagcacttatat 91  Q
    |||||||| ||||||| | ||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  37765948 gtaagttcttctcatctacttattttcttgtgtctggaatcgaaactgatcataagcacttatat 37765884  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 409
Target Start/End: Complemental strand, 37744387 - 37744287
Alignment:
Q  309 gtgtttccaggtcgagaatatgtgtgaagagtatccctaaatattatacggaggatcatctaagactaaaattttctaagataggagaaataactgatgt 408  Q
    ||||||||||||| || ||||| ||||||| | |||||||||||  | | |||||||  |||| || | ||||||||| || ||||||||||||||||||    
T  37744387 gtgtttccaggtccaggatatgcgtgaagaatctccctaaatatgttgcagaggatcgactaaaacaagaattttctaggaaaggagaaataactgatgt 37744288  T
Q  409 c 409  Q
    |    
T  37744287 c 37744287  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 7612379 - 7612350
Alignment:
Q  97 gcttatgctataagctgcaaattaagttgt 126  Q
    ||||||||||||||||||||||||||||||    
T  7612379 gcttatgctataagctgcaaattaagttgt 7612350  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 30535499 - 30535470
Alignment:
Q  97 gcttatgctataagctgcaaattaagttgt 126  Q
    ||||||||||||||||||||||||||||||    
T  30535499 gcttatgctataagctgcaaattaagttgt 30535470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 37765717 - 37765664
Alignment:
Q  131 taattgattgtttaatttgtcacagacgcatcc-ttgccagctttgtctactat 183  Q
    ||||||| ||||||||||||| ||||||  ||| ||||||||||||||||||||    
T  37765717 taattgagtgtttaatttgtctcagacgattccattgccagctttgtctactat 37765664  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 10772029 - 10772059
Alignment:
Q  98 cttatgctataagctgcaaattaagttgtat 128  Q
    |||||||||||||||||||||||||||||||    
T  10772029 cttatgctataagctgcaaattaagttgtat 10772059  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 28039462 - 28039495
Alignment:
Q  93 atgcgcttatgctataagctgcaaattaagttgt 126  Q
    ||||||||||||||||| ||||||||||||||||    
T  28039462 atgcgcttatgctataaactgcaaattaagttgt 28039495  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 47885133 - 47885181
Alignment:
Q  75 ttcataagcacttatatcat--gcgcttatgctataagctgcaaattaa 121  Q
    |||||||||| |||||| ||  |||||||||||||||||||||||||||    
T  47885133 ttcataagcaattatatgataagcgcttatgctataagctgcaaattaa 47885181  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 48064229 - 48064200
Alignment:
Q  97 gcttatgctataagctgcaaattaagttgt 126  Q
    ||||||||||||||||||||||||||||||    
T  48064229 gcttatgctataagctgcaaattaagttgt 48064200  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 24558771 - 24558743
Alignment:
Q  98 cttatgctataagctgcaaattaagttgt 126  Q
    |||||||||||||||||||||||||||||    
T  24558771 cttatgctataagctgcaaattaagttgt 24558743  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 44426538 - 44426566
Alignment:
Q  98 cttatgctataagctgcaaattaagttgt 126  Q
    |||||||||||||||||||||||||||||    
T  44426538 cttatgctataagctgcaaattaagttgt 44426566  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 55113583 - 55113555
Alignment:
Q  98 cttatgctataagctgcaaattaagttgt 126  Q
    |||||||||||||||||||||||||||||    
T  55113583 cttatgctataagctgcaaattaagttgt 55113555  T

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