View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_314 (Length: 230)
Name: NF8902A_low_314
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_314 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4301795 - 4301572
Alignment:
| Q |
1 |
ttcgagctctttattttgcacttaacttgctgctttggttttttggtccaatacccatgtttatttgctcattggttatggttcttgttcttcattatct |
100 |
Q |
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| T |
4301795 |
ttcgagctctttattttgcacttaacttgctgctttggttttttggtccaatatccatgtttatttgctcattggttatggttcttgttcttcattatct |
4301696 |
T |
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| Q |
101 |
tcttgactcaaattcaaggccattgcatttgcatccttctagatctcagggtggcaagtttcagatggcaaaaaacaacttaacttatgaagagatacct |
200 |
Q |
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| T |
4301695 |
tcttgactcaaattcaaggccattgcatttgcatcctgctagatctcagggtgtcaagtttcagatggcaaaaaataacttaacttatgaagagatacct |
4301596 |
T |
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| Q |
201 |
tagctagacagctagcaaggaatc |
224 |
Q |
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| T |
4301595 |
tagctagacagctagcaaggaatc |
4301572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 87227 - 87016
Alignment:
| Q |
10 |
tttattttgcacttaacttgctgctttggttttttggtccaatacccatgtttatttgctcattggttatggttcttgttcttcattatcttcttgactc |
109 |
Q |
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| T |
87227 |
tttattttgcacttaactcgctgctttggttttttggtccaatacccatgtttatttgctcattggttatggttcatgttcttcattatctt---gactc |
87131 |
T |
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| Q |
110 |
aaattcaaggccattgcatttgcatccttctagatctcagggtggcaagtttcagatggcaaaaaacaacttaacttatgaagagataccttagctagac |
209 |
Q |
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| T |
87130 |
aaattcgaggctattgcatttgaatcctacaagatatcagggtggcaagtttcagatggaaaaaaacaacttaacttatgaagagataccttagctagac |
87031 |
T |
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| Q |
210 |
agctagcaaggaatc |
224 |
Q |
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| T |
87030 |
agctagcaaggaatc |
87016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 33101244 - 33101057
Alignment:
| Q |
5 |
agctctttattttgcacttaacttgctgctttggttttttggtccaatacccatgtttatttgctcattggttatggttcttgttcttcattatcttctt |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
33101244 |
agctctttaatttgcacttaacttgctgctttggttttttggtccaatacccatgtttatttgctcattggttatggttcatgttcttcatta---tctt |
33101148 |
T |
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| Q |
105 |
gactcaaattcaaggccattgcatttgcatccttctagatctcagggtggcaagtttcagatggcaaaaaacaacttaacttatgaagaga |
195 |
Q |
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| T |
33101147 |
gactcaaattcaaggctattgcatttgaatcctacaagatctcagggtggcaagtttcagatggcaaaaaacaacttaacttatgaagaga |
33101057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 33099485 - 33099448
Alignment:
| Q |
187 |
atgaagagataccttagctagacagctagcaaggaatc |
224 |
Q |
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| T |
33099485 |
atgaagagataccttagctagacagctagcaaggaatc |
33099448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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