View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_33 (Length: 423)
Name: NF8902A_low_33
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 257 - 417
Target Start/End: Original strand, 33399827 - 33399989
Alignment:
| Q |
257 |
aggacagctgattccttccttttgaggtgctataaattgtccaaattcctatttcctctagtcgcccgaatgacatttctcatgcggggagctaacaaga |
356 |
Q |
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| T |
33399827 |
aggacagctgattccttccttttgaggtgctataacttgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaat |
33399926 |
T |
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| Q |
357 |
gtggcttcttttcgttgtagtcttcacataaattcttgaaga--atagaaatgaatctcttca |
417 |
Q |
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| T |
33399927 |
gtggcttcttttcgttgtagtcttcacataaattcttgaagatcatagaaatgaatcttttca |
33399989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 32493717 - 32493567
Alignment:
| Q |
64 |
gccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccataaattctttctcat |
163 |
Q |
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| T |
32493717 |
gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccataaattctttctcat |
32493627 |
T |
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| Q |
164 |
tcttcctataatttgttgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
223 |
Q |
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| T |
32493626 |
tcttcctataatttggtgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
32493567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 33399698 - 33399795
Alignment:
| Q |
53 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
150 |
Q |
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| T |
33399698 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
33399795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 32492895 - 32492827
Alignment:
| Q |
232 |
tggacacaatgctcccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
300 |
Q |
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| T |
32492895 |
tggacgcaatgcccccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
32492827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 32492828 - 32492759
Alignment:
| Q |
350 |
aacaagagtggcttcttttcgttgtagtcttcacata--aattcttgaagaatagaaatgaatctcttca |
417 |
Q |
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| T |
32492828 |
aacaagagtggcttcttttcgttgcagtcttcacatataaattcttgaagaatagaaatgaatctcttca |
32492759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 20287476 - 20287513
Alignment:
| Q |
22 |
tcaataaatatgaaagtcaaacagaggtgacaagacgg |
59 |
Q |
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| T |
20287476 |
tcaataaatatgaaagtcaaacagaggtgacaagacgg |
20287513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 20286216 - 20286252
Alignment:
| Q |
21 |
atcaataaatatgaaagtcaaacagaggtgacaagac |
57 |
Q |
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| T |
20286216 |
atcaacaaatatggaagtcaaacagaggtgacaagac |
20286252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 6182885 - 6182925
Alignment:
| Q |
21 |
atcaataaatatgaaagtcaaacagaggtgacaagacggtg |
61 |
Q |
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| T |
6182885 |
atcaaaaaatattcaagtcaaacagaggtgacaagacggtg |
6182925 |
T |
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