View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_333 (Length: 228)

Name: NF8902A_low_333
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_333
NF8902A_low_333
[»] chr1 (9 HSPs)
chr1 (12-228)||(48585151-48585367)
chr1 (12-212)||(48639740-48639940)
chr1 (80-227)||(48661377-48661524)
chr1 (80-227)||(48666972-48667119)
chr1 (12-208)||(11547078-11547274)
chr1 (12-168)||(48618292-48618448)
chr1 (84-166)||(48628755-48628837)
chr1 (61-178)||(48652997-48653114)
chr1 (86-178)||(48656445-48656537)
[»] chr3 (1 HSPs)
chr3 (68-170)||(19665704-19665806)
[»] chr8 (2 HSPs)
chr8 (78-201)||(27223830-27223953)
chr8 (78-156)||(27228066-27228144)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 48585367 - 48585151
Alignment:
Q  12 aaatctcagatcttgttcatcctgtttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagt 111  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  48585367 aaatctcagatcttgtgcatcctttttgttcatttccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaagtgttttgtgtattagt 48585268  T
Q  112 ggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgca 211  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585267 ggatacctatgaagaactagagcatgaattcatagattatatttcgaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgca 48585168  T
Q  212 aaaggagcaagcaacat 228  Q
    |||||||||||||||||    
T  48585167 aaaggagcaagcaacat 48585151  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 48639940 - 48639740
Alignment:
Q  12 aaatctcagatcttgttcatcctgtttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagt 111  Q
    ||||||||||  || | |||||| |||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48639940 aaatctcagactttatacatccttttttcccatttccatttctaggtaaactcatcttagaagagtttaaggacttgtctaaagtgttttgtgtattagt 48639841  T
Q  112 ggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgca 211  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||| || |||||||||| ||||| ||||||||||||    
T  48639840 ggatacctatgaagaactagagcatgatttcatagattatatttcaaaaaaatcaatcaccataagacctattggtccttcgtttaagaatccaaatgca 48639741  T
Q  212 a 212  Q
    |    
T  48639740 a 48639740  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 48661524 - 48661377
Alignment:
Q  80 aaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaa 179  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| |||||||||||| ||||||||     
T  48661524 aaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaaatcaatcaccataagac 48661425  T
Q  180 ctgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaaca 227  Q
     |||||||||||  ||||| |||||||| ||||| |||||||||||||    
T  48661424 atgttggtcctttgtttaagaatccaaaggcaaatggagcaagcaaca 48661377  T

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Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 48667119 - 48666972
Alignment:
Q  80 aaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaa 179  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| ||||  ||||||||||| ||||||||     
T  48667119 aaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgccataagac 48667020  T
Q  180 ctgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaaca 227  Q
    | ||||||||||  |||||||||||||| ||||| |||||||||||||    
T  48667019 ccgttggtcctttgtttaaaaatccaaaggcaaacggagcaagcaaca 48666972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 11547274 - 11547078
Alignment:
Q  12 aaatctcagatcttgttcatcctgtttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagt 111  Q
    ||||| ||||| || |||||||| || |||||| |||||| ||||| | |||| |||||||| |||||||| | || ||||||||||||||||| |||||    
T  11547274 aaatcccagattttcttcatccttttagtccatatccatttctagggacactcatcttagaacagtttaagaatttatctaaagtgttttgtgttttagt 11547175  T
Q  112 ggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaat 208  Q
     || ||||||||||||||||| ||||| ||||| || ||| || | |||||||| |||| ||||||| || ||||||| |  |||||||||||||||    
T  11547174 agaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaatccatccacataagacctattggtccattgtttaaaaatccaaat 11547078  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 48618292 - 48618448
Alignment:
Q  12 aaatctcagatcttgttcatcctgtttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagt 111  Q
    ||||| ||||| || |||||||| || ||| ||||||||| ||||| | |||| |||||||| |||||||| | ||||||||||| |||||||| |||||    
T  48618292 aaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagt 48618391  T
Q  112 ggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaat 168  Q
     || ||||||||||||||||||||||| ||||| || ||| |||| |||||| ||||    
T  48618392 agaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaaaacaat 48618448  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 48628837 - 48628755
Alignment:
Q  84 acttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatca 166  Q
    ||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  48628837 acttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatca 48628755  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 48653114 - 48652997
Alignment:
Q  61 actcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaa 160  Q
    ||||||||||||| |  ||||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| ||     
T  48653114 actcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaac 48653015  T
Q  161 aaatcaatccccataaga 178  Q
    |||||||||| |||||||    
T  48653014 aaatcaatcctcataaga 48652997  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 48656537 - 48656445
Alignment:
Q  86 ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataaga 178  Q
    ||||||||||  || |||||||| ||||||||||||||||||||||||| ||| || || |||||| ||||  |||| ||||||  |||||||    
T  48656537 ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataaga 48656445  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 19665704 - 19665806
Alignment:
Q  68 ttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaa 167  Q
    |||||| |||||||| | || |||||||||||||||||||| |||||||  ||||| |||||||||||||| | ||| || ||| |||| ||||||||||    
T  19665704 ttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttcgaaaaaatcaa 19665803  T
Q  168 tcc 170  Q
    |||    
T  19665804 tcc 19665806  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 27223953 - 27223830
Alignment:
Q  78 ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataag 177  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| || ||| |||| ||||| ||| ||   |||||    
T  27223953 ttaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtcaaaataag 27223854  T
Q  178 aactgttggtccttcatttaaaaa 201  Q
    | || |||||||||  ||||||||    
T  27223853 acctattggtcctttgtttaaaaa 27223830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 27228144 - 27228066
Alignment:
Q  78 ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc 156  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| ||||| ||||    
T  27228144 ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttc 27228066  T

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