View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_334 (Length: 228)
Name: NF8902A_low_334
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_334 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 10010473 - 10010331
Alignment:
| Q |
1 |
aaattgaaaaatgtaacaagaaaatggtgcataccaatgtactaatttgtacaaaacaannnnnnnnnnnngtggctctacaatgttgcagaaaaagggt |
100 |
Q |
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| T |
10010473 |
aaattgaaaaatgtaaaaa-aaaatggtgcataccaatgtactaatttgtacaaaacaa--ttttttttgtgtggctctacaatgttgcagaaagagagt |
10010377 |
T |
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| Q |
101 |
gaaagagacactaaaatgttctttcccaacaataataaaaattgtaag |
148 |
Q |
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| T |
10010376 |
g--acagacactaaaatgttctttcccaataatagtaaaaattgtaag |
10010331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 10010337 - 10010287
Alignment:
| Q |
170 |
ttgtaagttatgaaagtggaagaatgtgctatgctatataaagagtatgatat |
222 |
Q |
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| T |
10010337 |
ttgtaagttatgaaagtggaagaatgtgctatgctatat--agagtatgatat |
10010287 |
T |
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