View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_34 (Length: 423)
Name: NF8902A_low_34
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_34 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0254 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 2162742 - 2162326
Alignment:
| Q |
1 |
aagaatatctcagggggcacagcataatccttaagcaaaccataaacatagtcctcaaattcaaccaatttcttcatcacctcttctttgtctttcagtt |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| || |
|
|
| T |
2162742 |
aagaaaatctcaggggacacagcataatccttaagcaaaccataaacatagtcttcaaattcaaccaatttgttcaatacctcttctttgtctttcactt |
2162643 |
T |
|
| Q |
101 |
cgttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaaccacttccacattcttcctacttgaactatt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||| || |
|
|
| T |
2162642 |
ctttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccactttcttcttacttgtactgtt |
2162543 |
T |
|
| Q |
201 |
tgattcattttcggcttttgatgactcttctaccaaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatct |
300 |
Q |
| |
|
| ||||||||| | ||||| || ||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2162542 |
taattcatttttagtttttgtcgagtcttcctctaaccattcctccaaagttttgaagtgtttggatctatgtttattgacataatctttaccaccatct |
2162443 |
T |
|
| Q |
301 |
ctatagtattgagcaataactagtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggct |
400 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| | |
|
|
| T |
2162442 |
ctatagtactgagcaatagctagtggttcaaccattcttctatatgtagttccaccgaagagccagcgattacgaaatgcagcgccttctctttgaggtt |
2162343 |
T |
|
| Q |
401 |
tcagttcagcttcttca |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2162342 |
tcagttcagcttcttca |
2162326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 2168905 - 2168489
Alignment:
| Q |
1 |
aagaatatctcagggggcacagcataatccttaagcaaaccataaacatagtcctcaaattcaaccaatttcttcatcacctcttctttgtctttcagtt |
100 |
Q |
| |
|
||||| |||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
2168905 |
aagaaaatctcaggagacacaacataatccttaagcaaaccataaacatagttttcaaattcaaccaatttattcaatacctcttctttgtatttcacaa |
2168806 |
T |
|
| Q |
101 |
cgttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaaccacttccacattcttcctacttgaactatt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || ||| |
|
|
| T |
2168805 |
ccttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattcttcctatttatacgatt |
2168706 |
T |
|
| Q |
201 |
tgattcattttcggcttttga-tgactcttctaccaaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatc |
299 |
Q |
| |
|
||||||| ||| ||||||| || | |||| | |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
2168705 |
tgattcaattttagcttttgtctggc-cttcctctaaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtc |
2168607 |
T |
|
| Q |
300 |
tctatagtattgagcaataactagtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggc |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||| |
|
|
| T |
2168606 |
tctatagtattgagcaatagctagtggttcaaccattcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggc |
2168507 |
T |
|
| Q |
400 |
ttcagttcagcttcttca |
417 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
2168506 |
ttcagatcagcttcttca |
2168489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 2180538 - 2180122
Alignment:
| Q |
1 |
aagaatatctcagggggcacagcataatccttaagcaaaccataaacatagtcctcaaattcaaccaatttcttcatcacctcttctttgtctttcagtt |
100 |
Q |
| |
|
||||| |||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
2180538 |
aagaaaatctcaggagacacaacataatccttaagcaaaccataaacatagttttcaaattcaaccaatttattcaatacctcttctttgtatttcacaa |
2180439 |
T |
|
| Q |
101 |
cgttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaaccacttccacattcttcctacttgaactatt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || ||| |
|
|
| T |
2180438 |
ccttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattcttcctatttatacgatt |
2180339 |
T |
|
| Q |
201 |
tgattcattttcggcttttga-tgactcttctaccaaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatc |
299 |
Q |
| |
|
||||||| ||| ||||||| || | |||| | |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
2180338 |
tgattcaattttagcttttgtctggc-cttcctctaaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtc |
2180240 |
T |
|
| Q |
300 |
tctatagtattgagcaataactagtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggc |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||| |
|
|
| T |
2180239 |
tctatagtattgagcaatagctagtggttcaaccattcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggc |
2180140 |
T |
|
| Q |
400 |
ttcagttcagcttcttca |
417 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
2180139 |
ttcagatcagcttcttca |
2180122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 24 - 344
Target Start/End: Complemental strand, 2207739 - 2207431
Alignment:
| Q |
24 |
ataatccttaagcaaaccataaacatagtcctcaaattcaaccaatttcttcatcacctcttctttgtctttcagttcgttcaactctttgcatgcaagt |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
2207739 |
ataatccttaagcaaacaataaacatagtcctcaaattcaaccaatttcttcaatacctcttctttgtctttcacaaccttcaactcgttgcatgcaagt |
2207640 |
T |
|
| Q |
124 |
atagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaaccacttccacattcttcctacttgaactatttgattcattttcggcttttgatg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| || || || |||| || | |||| | ||||| |||||||| ||| ||| || |
|
|
| T |
2207639 |
atagcctcttcaacatgtgcccaaaagcaagaatctctagtcaaaatcattttcatattcgtcttccttgtaatatttaattcatttatggcatttcttg |
2207540 |
T |
|
| Q |
224 |
actcttctaccaaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactag |
323 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||| | ||||||||||||||| ||| |
|
|
| T |
2207539 |
act------------gttcctccaattttttgaagtgtttggacctttttttattcacataatctttaccaccttctttgtagtattgagcaatagctaa |
2207452 |
T |
|
| Q |
324 |
tggttcaaccattcttctata |
344 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2207451 |
tggttcaaccattcttctata |
2207431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 2153537 - 2153494
Alignment:
| Q |
126 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaa |
169 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
2153537 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaa |
2153494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 14362 - 14779
Alignment:
| Q |
1 |
aagaatatctcagggggcacagcataatccttaagcaaaccataaacatagtcctcaaattcaaccaatttcttcatcacctcttctttgtctttcagtt |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| || |
|
|
| T |
14362 |
aagaaaatctcaggggacacagcataatccttaagcaaaccataaacatagtcttcaaattcaaccaatttgttcaatacctcttctttgtctttcactt |
14461 |
T |
|
| Q |
101 |
cgttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaaccacttccacattcttcctacttgaactatt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||| || |
|
|
| T |
14462 |
ctttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccactttcttcttacttgtactgtt |
14561 |
T |
|
| Q |
201 |
tgattcattttcggcttttgatgactcttctaccaaccattcct-ccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatc |
299 |
Q |
| |
|
| ||||||||| | ||||| || ||||| | |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14562 |
taattcatttttagtttttgtcgagtcttcctctaaccattcctcccaaagttttgaagtgtttggatctatgtttattgacataatctttaccaccatc |
14661 |
T |
|
| Q |
300 |
tctatagtattgagcaataactagtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggc |
399 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
14662 |
tctatagtactgagcaatagctagtggttcaaccattcttctatatgtagttccaccgaagagccagcgattacgaaatgcagcgccttctctttgaggt |
14761 |
T |
|
| Q |
400 |
ttcagttcagcttcttca |
417 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14762 |
ttcagttcagcttcttca |
14779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 235 - 417
Target Start/End: Original strand, 2026 - 2208
Alignment:
| Q |
235 |
aaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacca |
334 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2026 |
aaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacca |
2125 |
T |
|
| Q |
335 |
ttcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2126 |
ttcttctatatgtagttccaccgaagagccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttca |
2208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 27784784 - 27784965
Alignment:
| Q |
4 |
aatatctcagggggcacagcataatccttaagcaaaccataaacatagtcctcaaattcaaccaatttcttcatcacctcttctttgtctttcagttcgt |
103 |
Q |
| |
|
||||||||||| | ||| ||||||||||| ||||| ||||||||||| |||||| || || ||||||||| | || || ||||| ||||| | | | |
|
|
| T |
27784784 |
aatatctcaggagacactgcataatccttgagcaatccataaacatacacctcaattttaaacaatttctttagtacatcgtctttctctttgacaccct |
27784883 |
T |
|
| Q |
104 |
tcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaaccacttccacattctt |
185 |
Q |
| |
|
|||||||| |||| ||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27784884 |
tcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctt |
27784965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 27781116 - 27781219
Alignment:
| Q |
234 |
caaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacc |
333 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||| |||| |||||| ||| |||| || | ||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
27781116 |
caaccattcctccaactgtttgaagtgtttagaccttttgttat-gacatagtctataccgccttttctatagtattcagcaatagctagaggttcaacc |
27781214 |
T |
|
| Q |
334 |
attct |
338 |
Q |
| |
|
||||| |
|
|
| T |
27781215 |
attct |
27781219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 27780993 - 27781049
Alignment:
| Q |
103 |
ttcaactctttgcatgcaagtatagcctcttcaacatgtgcccaaaagcaagaatct |
159 |
Q |
| |
|
||||||||| ||||| ||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27780993 |
ttcaactctctgcataaaaggagagcctcttcaacatgtgcccaaaagcacgaatct |
27781049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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