View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_341 (Length: 225)

Name: NF8902A_low_341
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_341
NF8902A_low_341
[»] chr1 (35 HSPs)
chr1 (5-225)||(31745393-31745612)
chr1 (17-130)||(36393479-36393592)
chr1 (11-130)||(50974566-50974685)
chr1 (23-155)||(45584509-45584641)
chr1 (17-131)||(25302066-25302180)
chr1 (38-130)||(4039621-4039713)
chr1 (17-152)||(34596118-34596250)
chr1 (11-155)||(40377012-40377156)
chr1 (11-155)||(44719151-44719295)
chr1 (18-155)||(7549813-7549950)
chr1 (54-155)||(25095579-25095680)
chr1 (11-155)||(31652593-31652736)
chr1 (23-130)||(5851530-5851635)
chr1 (44-132)||(45753443-45753531)
chr1 (17-125)||(12636305-12636414)
chr1 (46-155)||(34445639-34445748)
chr1 (47-130)||(5115634-5115717)
chr1 (24-103)||(12148304-12148383)
chr1 (46-152)||(28672315-28672420)
chr1 (44-130)||(40203103-40203189)
chr1 (16-98)||(42850094-42850176)
chr1 (34-132)||(5787457-5787554)
chr1 (23-100)||(50222611-50222688)
chr1 (43-130)||(33744159-33744246)
chr1 (43-125)||(39241430-39241512)
chr1 (43-99)||(48253319-48253375)
chr1 (26-105)||(44442270-44442349)
chr1 (17-108)||(50328315-50328405)
chr1 (44-129)||(3338051-3338137)
chr1 (77-131)||(5597710-5597764)
chr1 (93-155)||(27396102-27396164)
chr1 (43-136)||(14774091-14774184)
chr1 (54-127)||(28171517-28171590)
chr1 (72-155)||(13954183-13954271)
chr1 (46-90)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (11-155)||(49446585-49446730)
chr4 (16-155)||(44646522-44646661)
chr4 (17-130)||(44647879-44647992)
chr4 (34-155)||(6316821-6316942)
chr4 (24-136)||(9802621-9802732)
chr4 (24-154)||(42197007-42197136)
chr4 (23-138)||(42844030-42844145)
chr4 (33-127)||(33982423-33982517)
chr4 (43-151)||(25196110-25196218)
chr4 (16-127)||(20390023-20390134)
chr4 (17-130)||(24395194-24395308)
chr4 (54-155)||(40480205-40480306)
chr4 (24-105)||(44088286-44088367)
chr4 (23-113)||(50115059-50115146)
chr4 (43-130)||(12103864-12103951)
chr4 (11-129)||(41468080-41468198)
chr4 (24-114)||(49144774-49144864)
chr4 (76-155)||(28165362-28165442)
chr4 (44-126)||(39727579-39727660)
chr4 (17-121)||(49769115-49769219)
chr4 (43-155)||(50086432-50086543)
chr4 (17-155)||(52373042-52373181)
chr4 (54-127)||(34235910-34235984)
chr4 (24-90)||(36721591-36721657)
chr4 (17-114)||(1696186-1696283)
chr4 (38-90)||(38494777-38494829)
chr4 (16-132)||(5387904-5388022)
chr4 (54-113)||(31871090-31871149)
chr4 (57-130)||(53919863-53919936)
chr4 (38-130)||(27346293-27346385)
chr4 (18-132)||(27981368-27981483)
chr4 (11-90)||(41370160-41370239)
chr4 (27-129)||(51105918-51106020)
chr4 (76-125)||(27706954-27707003)
chr4 (94-155)||(44088211-44088272)
chr4 (26-155)||(52650697-52650826)
chr4 (43-131)||(11875452-11875539)
chr4 (56-155)||(23230272-23230372)
chr4 (43-155)||(47560596-47560707)
[»] chr3 (28 HSPs)
chr3 (11-155)||(34758899-34759043)
chr3 (24-154)||(30687084-30687214)
chr3 (25-143)||(38388694-38388812)
chr3 (16-155)||(27968170-27968307)
chr3 (16-155)||(52340118-52340257)
chr3 (16-130)||(18399156-18399271)
chr3 (35-154)||(54912014-54912133)
chr3 (44-155)||(28434481-28434591)
chr3 (16-155)||(38704947-38705086)
chr3 (54-155)||(779710-779810)
chr3 (23-119)||(7754774-7754871)
chr3 (17-108)||(19898100-19898191)
chr3 (17-154)||(25548196-25548333)
chr3 (17-130)||(4033026-4033138)
chr3 (43-110)||(55110042-55110109)
chr3 (52-126)||(43749507-43749581)
chr3 (44-114)||(53433211-53433281)
chr3 (72-127)||(1680511-1680566)
chr3 (43-134)||(2831538-2831629)
chr3 (46-130)||(39976721-39976804)
chr3 (35-110)||(54955783-54955859)
chr3 (77-131)||(11404700-11404754)
chr3 (54-104)||(40546348-40546398)
chr3 (118-155)||(29497248-29497285)
chr3 (110-155)||(29611990-29612035)
chr3 (43-99)||(21490626-21490682)
chr3 (54-118)||(30463992-30464056)
chr3 (72-112)||(37775371-37775411)
[»] chr5 (24 HSPs)
chr5 (24-155)||(8247037-8247168)
chr5 (11-155)||(3263717-3263861)
chr5 (11-152)||(19692696-19692838)
chr5 (11-129)||(35395184-35395302)
chr5 (24-127)||(5356303-5356406)
chr5 (11-155)||(10051700-10051844)
chr5 (25-155)||(28793305-28793435)
chr5 (16-153)||(1354345-1354481)
chr5 (34-130)||(21582367-21582463)
chr5 (46-148)||(14042440-14042542)
chr5 (11-127)||(22473432-22473549)
chr5 (32-129)||(31889611-31889709)
chr5 (72-155)||(4725897-4725979)
chr5 (17-152)||(14474998-14475133)
chr5 (78-132)||(22871913-22871967)
chr5 (46-131)||(3758194-3758279)
chr5 (16-100)||(142352-142436)
chr5 (46-118)||(26663642-26663714)
chr5 (46-118)||(26935237-26935309)
chr5 (16-155)||(27650806-27650944)
chr5 (76-129)||(37976444-37976497)
chr5 (77-131)||(12933327-12933381)
chr5 (72-118)||(24241210-24241256)
chr5 (46-103)||(24241039-24241096)
[»] chr2 (27 HSPs)
chr2 (11-155)||(8789826-8789970)
chr2 (33-155)||(20683011-20683133)
chr2 (11-155)||(44941073-44941216)
chr2 (34-132)||(4238341-4238438)
chr2 (24-130)||(8773678-8773784)
chr2 (16-132)||(18053015-18053130)
chr2 (17-127)||(2393038-2393148)
chr2 (17-155)||(6761724-6761862)
chr2 (16-130)||(34546265-34546379)
chr2 (17-130)||(42945012-42945125)
chr2 (17-143)||(42966938-42967066)
chr2 (45-117)||(1070568-1070639)
chr2 (17-155)||(5961961-5962101)
chr2 (41-155)||(3882586-3882700)
chr2 (60-152)||(433551-433643)
chr2 (79-131)||(8898861-8898913)
chr2 (43-155)||(18227092-18227204)
chr2 (11-127)||(35228732-35228848)
chr2 (46-129)||(2825983-2826066)
chr2 (18-132)||(7271769-7271887)
chr2 (76-143)||(13442636-13442703)
chr2 (72-130)||(3199541-3199599)
chr2 (17-127)||(26025761-26025871)
chr2 (46-131)||(31448315-31448400)
chr2 (72-125)||(45212057-45212110)
chr2 (43-154)||(14102323-14102435)
chr2 (43-131)||(33275918-33276005)
[»] chr7 (31 HSPs)
chr7 (11-129)||(30412912-30413030)
chr7 (25-119)||(48137789-48137883)
chr7 (11-155)||(8170001-8170145)
chr7 (36-130)||(42493703-42493798)
chr7 (24-155)||(47507580-47507711)
chr7 (17-155)||(16878677-16878815)
chr7 (28-125)||(2964049-2964146)
chr7 (17-128)||(44391426-44391537)
chr7 (41-132)||(5248088-5248179)
chr7 (16-151)||(38452146-38452280)
chr7 (38-130)||(2741168-2741260)
chr7 (16-89)||(46684553-46684626)
chr7 (24-127)||(43670409-43670512)
chr7 (46-135)||(676400-676488)
chr7 (16-132)||(15034795-15034911)
chr7 (44-143)||(37352436-37352535)
chr7 (54-138)||(33887887-33887971)
chr7 (72-155)||(45375399-45375483)
chr7 (25-84)||(47305532-47305592)
chr7 (43-90)||(15995924-15995971)
chr7 (16-129)||(36285775-36285887)
chr7 (21-103)||(44495238-44495320)
chr7 (43-152)||(35754017-35754126)
chr7 (46-155)||(36015032-36015141)
chr7 (17-84)||(27359398-27359466)
chr7 (43-90)||(14574768-14574815)
chr7 (54-161)||(35599837-35599944)
chr7 (16-86)||(11678038-11678108)
chr7 (43-132)||(31477085-31477175)
chr7 (43-156)||(10031945-10032058)
chr7 (80-133)||(25120218-25120271)
[»] chr8 (19 HSPs)
chr8 (16-155)||(31206280-31206419)
chr8 (24-125)||(38956884-38956985)
chr8 (25-130)||(45368729-45368834)
chr8 (17-128)||(20169716-20169827)
chr8 (11-132)||(5217750-5217869)
chr8 (16-129)||(5020051-5020162)
chr8 (17-130)||(7044329-7044442)
chr8 (24-155)||(9632898-9633030)
chr8 (76-158)||(33636685-33636767)
chr8 (26-152)||(39691121-39691247)
chr8 (55-155)||(24103087-24103187)
chr8 (63-155)||(39932721-39932813)
chr8 (92-130)||(36819755-36819793)
chr8 (17-155)||(10335020-10335159)
chr8 (11-90)||(17520995-17521074)
chr8 (80-155)||(37564393-37564468)
chr8 (92-154)||(2124141-2124203)
chr8 (95-155)||(5968377-5968437)
chr8 (43-155)||(22209376-22209488)
[»] chr6 (12 HSPs)
chr6 (17-130)||(16442075-16442188)
chr6 (11-130)||(12383010-12383129)
chr6 (32-127)||(8176324-8176419)
chr6 (46-129)||(12307821-12307904)
chr6 (17-155)||(31702738-31702874)
chr6 (17-130)||(6048268-6048381)
chr6 (44-152)||(7465451-7465558)
chr6 (83-154)||(22696000-22696071)
chr6 (28-126)||(35241410-35241509)
chr6 (46-86)||(22695509-22695549)
chr6 (46-127)||(26311807-26311889)
chr6 (54-155)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (54-155)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 31745393 - 31745612
Alignment:
Q  5 actagtcacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 104  Q
    ||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745393 actaggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 31745492  T
Q  105 tattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaattaacnnnnnnnattaactcaacactgttcttgtcataattaaatat 204  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  31745493 tattcttttagaatctttaaagagtgcctcggaggcactagttaacaagacaattaac-ttttttattaactcaacactgttcttgtcataattaaatat 31745591  T
Q  205 ttttgttatgacatgttttat 225  Q
    || ||||||||||||||||||    
T  31745592 ttatgttatgacatgttttat 31745612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 36393592 - 36393479
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| |||||| ||||||| |||||||  |    
T  36393592 ttaagacctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaa 36393493  T
Q  117 atctttaaagagtg 130  Q
    ||| ||||||||||    
T  36393492 atccttaaagagtg 36393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 50974566 - 50974685
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||||||||||||| |||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||||||| ||||    
T  50974566 cactcgttaagacctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataattttttct 50974665  T
Q  111 tttagaatctttaaagagtg 130  Q
    |||  |||| || |||||||    
T  50974666 tttgaaatccttcaagagtg 50974685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 45584641 - 45584509
Alignment:
Q  23 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 122  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||   |||  |||||||| ||||| |||||||||||||| ||||||| ||||| ||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  123 aaagagtgtctcggaggcactggttaacaagac 155  Q
    |||||||| | ||| |||| | |||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagac 45584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 25302180 - 25302066
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| || || ||||||||| ||||||||| ||||| ||| |||| || |||| ||    
T  25302180 ttaagacatttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttgga 25302081  T
Q  117 atctttaaagagtgt 131  Q
    ||| |||||||||||    
T  25302080 atccttaaagagtgt 25302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 4039621 - 4039713
Alignment:
Q  38 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    ||||||| ||||||| |||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  4039621 ttatcataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtg 4039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 34596118 - 34596250
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||||||||  |||||| | |||||| |||||||||||||||||| || ||||||||||||||| ||  |||||||||||||| ||||||||||    
T  34596118 ttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttgaatt--ttataaaataatttcttcttttaga 34596215  T
Q  117 atctttaaagagtgtctcggaggcactggttaacaa 152  Q
    ||| |||| || |||| |||||||||  ||||||||    
T  34596216 atccttaatgaatgtc-cggaggcacccgttaacaa 34596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 40377156 - 40377012
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||| ||||||||| |||| ||||||||||||  ||||||||||||| || | ||||| |||||||||||||| ||||||||| |||| ||||    
T  40377156 cactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttcttct 40377057  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||| ||||| |||||||||| |   | |||||| |||||||||||    
T  40377056 tttggaatccttaaagagtgcccaaggggcactcgttaacaagac 40377012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 44719295 - 44719151
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||| |||||||| |||| ||||||||||||| |||||||||| ||||||   ||||| ||||||| ||||| |||||||||||| |||| |    
T  44719295 cactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatatttt 44719196  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||| ||||| ||||| |||||| ||| | |||| |||||||||||    
T  44719195 tttggaatccttaaaaagtgtcccggggacactcgttaacaagac 44719151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 7549950 - 7549813
Alignment:
Q  18 taagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaa 117  Q
    |||| ||||||||| |||||||||||||||||  ||||| |||||||||||   ||||||||||||||||||| ||||||||| |||| |||||||  ||    
T  7549950 taaggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttcttcttttgaaa 7549851  T
Q  118 tctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |  |||||||||||| ||  | |||| |||||||||||    
T  7549850 ttcttaaagagtgtcccgaggacactcgttaacaagac 7549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 25095680 - 25095579
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||  |||| |||| | |||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtgtcatggagacactcgctaacaag 25095581  T
Q  154 ac 155  Q
    ||    
T  25095580 ac 25095579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 31652736 - 31652593
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||  |||||||| ||||| ||||||||||||||||||||||| |||||||  |||  |||||||||||||| |||||||||||||| || |    
T  31652736 cactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttctt-t 31652638  T
Q  111 tttagaatctttaaagagtgtct-cggaggcactggttaacaagac 155  Q
    |||  |||| ||||||||| ||| ||||| |||| |||||||||||    
T  31652637 tttgaaatccttaaagagt-tctccggagacactcgttaacaagac 31652593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 5851635 - 5851530
Alignment:
Q  23 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 122  Q
    ||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| |||||||  |||| ||    
T  5851635 cctttaaatggtaacttatcatgaa--tatttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttcttcttttgaaatcctt 5851538  T
Q  123 aaagagtg 130  Q
    ||||||||    
T  5851537 aaagagtg 5851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 45753531 - 45753443
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 132  Q
    ||||||| |||||||||||||||| || ||| |||||||||||| || || | ||||||||| ||||||||||||||||||||||||||    
T  45753531 tgaaaatttgtgtaatcaatgcattgaaaattgaaatatttgacatttttctgaaataatttcttcttttagaatctttaaagagtgtc 45753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 12636305 - 12636414
Alignment:
Q  17 ttaagacctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||||||||||||||||| || |  |||||||||||||||||||||| || |  |||||||||| |||||||| | ||||||| |||||||||||| |    
T  12636305 ttaagacctttaaatagtaatttttttatgaaaatatgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattatttattcttttgg 12636404  T
Q  116 aatctttaaa 125  Q
    |||| |||||    
T  12636405 aatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 34445748 - 34445639
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 145  Q
    |||| |||| |||||||||||| |  ||||||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||   ||| |||||| |    
T  34445748 aaaacatgtctaatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcg 34445649  T
Q  146 ttaacaagac 155  Q
    ||||||||||    
T  34445648 ttaacaagac 34445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 5115634 - 5115717
Alignment:
Q  47 aaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||| |||||||| ||||||| |  ||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5115634 aaatttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtg 5115717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 12148304 - 12148383
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 103  Q
    |||||||| |||||||||||||||||||||||||| |||||||| |  |||| |||||||| ||||| | ||||||||||    
T  12148304 ctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 28672315 - 28672420
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 145  Q
    ||||||||||||||||||||||  | |||| |||||||||||||| ||| |||||||||  || |||||||||  || |||||||||||||| |||||      
T  28672315 aaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgctt-aagagtgtctcggatgcactca 28672413  T
Q  146 ttaacaa 152  Q
    |||||||    
T  28672414 ttaacaa 28672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 40203103 - 40203189
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||||||||||||||||||||||| |  ||| ||||||||||||||| |||| ||||||||| || ||||  |||| ||||||||||    
T  40203103 tgaaaatatgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtg 40203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 42850094 - 42850176
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaa 98  Q
    ||||||||||||||||  ||| ||||||| ||||||| | |||| |||||||||| ||||||||||||| ||||| |||||||    
T  42850094 gttaagacctttaaatgataatttatcataaaaatatatataattaatgcatcgaaaatcgaaatatttaacttttttataaa 42850176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 5787457 - 5787554
Alignment:
Q  34 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 132  Q
    ||||||||||  |||||||||||||| ||||||| |  ||| ||||||||| ||| | |||||||||| ||| ||||||| ||||| ||||||||||||    
T  5787457 taacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttcttctttt-gaatccttaaagagtgtc 5787554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 50222611 - 50222688
Alignment:
Q  23 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 100  Q
    |||||||||||||| || | ||||||||| ||||||||||||||| || |||  |||||||||| ||| |||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttttttataaaat 50222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 33744159 - 33744246
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    ||||||| || |||||||||||||| || ||||||||||||||||||| | | |||||||||  || ||||| |||  ||||||||||    
T  33744159 atgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtg 33744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 39241430 - 39241512
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 125  Q
    ||||||| |||||||||||||||||||| |||  ||||||||   ||| ||||||||||| ||||| ||||| |||| |||||    
T  39241430 atgaaaacatgtgtaatcaatgcatcgaaaattaaaatatttattttttttataaaataaattatttttttaaaatccttaaa 39241512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 48253375 - 48253319
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 99  Q
    |||||||||||| ||||||||| || || |||||||||| |||||||| ||||||||    
T  48253375 atgaaaatatgtataatcaatgtattgaaaatcgaaatagttgacttttttataaaa 48253319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 44442349 - 44442270
Alignment:
Q  26 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 105  Q
    |||||||||||||| | || |||||||||||| | |||| || || ||| ||||||||||||||| ||| | ||||||||    
T  44442349 ttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataattt 44442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 50328315 - 50328405
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 108  Q
    ||||||| |||||||  ||||||||||| ||||||||| |||| || | ||| | |||| |||||||| | ||| |||||||||||||||||    
T  50328315 ttaagacttttaaatgataacttatcataaaaatatgtataattaaagtatcaaaaatcaaaatattt-aattttttataaaataatttatt 50328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 3338051 - 3338137
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagt 129  Q
    ||||||| | |||||||||||||| || ||| |||||| || | ||| || || ||||||||| |||||||||||| ||||||||||    
T  3338051 tgaaaatttatgtaatcaatgcattgaaaattgaaatacttaattttttttatgaaataatttcttcttttagaatgtttaaagagt 3338137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 5597764 - 5597710
Alignment:
Q  77 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||    
T  5597764 aaatatttaacttttttatagaataatttcttcttttaaaatatttaaagagtgt 5597710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 27396164 - 27396102
Alignment:
Q  93 tataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||||||| || |||||||||  ||||||| |||||||| || ||| |||||||||||    
T  27396164 tataaaataatttcttattttagaattcttaaagaatgtctcggtggtacttgttaacaagac 27396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 14774184 - 14774091
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgg 136  Q
    |||||||| ||| || ||||||||| || ||||||||||||||| ||| | |  |||||||| ||| |||||||||  ||||||| | ||||||    
T  14774184 atgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataattgattattttagaatgcttaaagaatatctcgg 14774091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 28171517 - 28171590
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 127  Q
    |||||| |||||||  | ||| ||||||||| ||||| |||||||||||||| ||||||| ||||  |||||||    
T  28171517 tgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataattttttctttttgaatgcttaaaga 28171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 13954183 - 13954271
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt-----ctcggaggcactggttaacaagac 155  Q
    |||| |||| ||||| ||| ||||||| |||||| ||||| ||||||| |||||||||||     |||||||||||  |||||||||||    
T  13954183 aatcaaaatttttgatttttttataaagtaatttcttcttctagaatccttaaagagtgttccacctcggaggcacccgttaacaagac 13954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 15549686 - 15549642
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||    
T  15549686 aaaatgtgtgtaatcaatgcattgaaaatcgaaatattttacttt 15549642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 49446585 - 49446730
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattc 109  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || |||    
T  49446585 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttcttc 49446684  T
Q  110 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||| ||||| |||||||||| | ||  |||||| |||||||||||    
T  49446685 ttttggaatccttaaagagtgccccgagggcacttgttaacaagac 49446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 44646522 - 44646661
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||      
T  44646522 gttaaggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttga 44646621  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||| ||||||| || | ||| |||||| |||||||||||    
T  44646622 aatccttaaagaatgccccgggggcactcgttaacaagac 44646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 44647879 - 44647992
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||| |||||||||||||| ||| ||||||| ||    
T  44647879 ttaaggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttcttcttttgga 44647978  T
Q  117 atctttaaagagtg 130  Q
    ||||||||||||||    
T  44647979 atctttaaagagtg 44647992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 6316821 - 6316942
Alignment:
Q  34 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 133  Q
    |||||||||||||||||||||||||||||||||| || |||| |||| |||| |||| ||||||||| |||| |||||||  ||||||||||||||| |     
T  6316821 taacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagagtgccc 6316920  T
Q  134 cggaggcactggttaacaagac 155  Q
    |||||||||| |||||||||||    
T  6316921 cggaggcactcgttaacaagac 6316942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 9802621 - 9802732
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    ||||||| | ||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  9802621 ctttaaagaataacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaat-ttta 9802719  T
Q  124 aagagtgtctcgg 136  Q
    |||||||||||||    
T  9802720 aagagtgtctcgg 9802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 42197136 - 42197007
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||| |||||||||| ||| | |||||||||||| |||||||||||| ||||    
T  42197136 ctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttcttcttttagaat-ttta 42197038  T
Q  124 aagagtgtctcggaggcactggttaacaaga 154  Q
    ||||||||  || ||||||| ||||||||||    
T  42197037 aagagtgttccgaaggcactcgttaacaaga 42197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 42844145 - 42844030
Alignment:
Q  23 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 122  Q
    ||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||  | ||||  |||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcgttttttgaaatcttt 42844046  T
Q  123 aaagagtgtctcggag 138  Q
     ||||||||| |||||    
T  42844045 caagagtgtcccggag 42844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 33982517 - 33982423
Alignment:
Q  33 gtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 127  Q
    |||||||||||||||||||| ||||||||||| ||||  ||||||||||||| ||||| |||||||||||||| |||||||  |||| |||||||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaaga 33982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 25196218 - 25196110
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    ||||||| ||||||||| ||||  | |  |||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  25196218 atgaaaacatgtgtaattaatgtcttggaaatcaaaatatttgacttttttataaattaattttttcttttagaatccttaaagagtgtttcggaggcac 25196119  T
Q  143 tggttaaca 151  Q
    | |||||||    
T  25196118 tcgttaaca 25196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 20390134 - 20390023
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| | ||||||| |||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||| ||||||||| |||| || |||| |    
T  20390134 gttaaggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgttttgg 20390035  T
Q  116 aatctttaaaga 127  Q
    |||  |||||||    
T  20390034 aattcttaaaga 20390023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 24395194 - 24395308
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatg-catcgagaatcgaaatatttgac-tttattataaaataatttattctttta 114  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||| | | || |||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24395194 ttaagacctttatatagtaactttgtatgaaaatatgtgtaatcaatgtcttaga-aatcgaaatatttgaccttttttataaattaatttcttctttta 24395292  T
Q  115 gaatctttaaagagtg 130  Q
    ||||| ||||||||||    
T  24395293 gaatccttaaagagtg 24395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 40480205 - 40480306
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  40480205 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 40480304  T
Q  154 ac 155  Q
    ||    
T  40480305 ac 40480306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 44088367 - 44088286
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 105  Q
    |||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||| ||| | ||||||||||||    
T  44088367 ctttaaatagtaacttatcatgaagatatgtgtaatcaatgcaccaaaaatcaaaatatttgattttttaataaaataattt 44088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 50115146 - 50115059
Alignment:
Q  23 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 113  Q
    ||||||||| ||||||||||||   |||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| |||||||    
T  50115146 cctttaaatggtaacttatcat---aatatgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttctttt 50115059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 12103864 - 12103951
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    ||||||||||||||||||||||  | |  ||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| ||||    
T  12103864 atgaaaatatgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaaagtg 12103951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 41468198 - 41468080
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||| ||||||||| ||||||| |||| ||||||  |||||||||||||||   ||||| ||||||| ||||| |||||| ||||||| ||||    
T  41468198 cactagttaaggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttcttct 41468099  T
Q  111 tttagaatctttaaagagt 129  Q
    ||| ||||  |||||||||    
T  41468098 tttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 49144864 - 49144774
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 114  Q
    |||||||| |||| || |||| ||||||| ||||||||||||||||| |||| |||| ||| ||||| |||||||||||||| ||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttta 49144774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 28165442 - 28165362
Alignment:
Q  76 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |||| | |||||| |||||||||||    
T  28165442 gaaatatttgattttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagac 28165362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 39727579 - 39727660
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 126  Q
    ||||||| | |||||||||||||||   ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  39727579 tgaaaatttatgtaatcaatgcatcagaaattgaaatatttgacttt-ttatagaataatttattcttttagaatccttaaag 39727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 49769115 - 49769219
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| | ||   |||  |||| ||  ||||| ||||||||| |||| |||||||| |    
T  49769115 ttaagacctttaaatggtaacttatcataaaaatatgtgtaatcaattcgtcataaattaaaattttcaacttttttataaaattatttcttcttttaaa 49769214  T
Q  117 atctt 121  Q
    |||||    
T  49769215 atctt 49769219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 50086432 - 50086543
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    ||||||||||||||| ||||||||| || |||| |||||||||| ||| ||| | |||||||  || |||| |||| |||||||||| || ||| |||||    
T  50086432 atgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagtttcccgg-ggcac 50086530  T
Q  143 tggttaacaagac 155  Q
    | |||||||||||    
T  50086531 tcgttaacaagac 50086543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 52373042 - 52373181
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttag 115  Q
    ||||||| |||||||||||| || |  ||||||| ||||||||  |||||| || |||   ||||||||||||| || || ||||||||| || ||| |     
T  52373042 ttaagacttttaaatagtaattttttctgaaaatttgtgtaatttatgcattgaaaattataatatttgactttttttatgaaataatttcttatttcaa 52373141  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||| |||||||||||| |||||| ||| |||||||||||    
T  52373142 aatccttaaagagtgtcccggaggtactcgttaacaagac 52373181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 34235984 - 34235910
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaaga 127  Q
    |||||||||||||| || ||| ||||| ||||||||| || ||||||||||||||||||||| ||| ||||||||    
T  34235984 tgtaatcaatgcattgaaaattgaaatttttgactttttttataaaataatttattcttttaaaatgtttaaaga 34235910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 36721591 - 36721657
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||||||||||| || | ||| |||| |||||||||||||||| |||||| |||||||||||||||    
T  36721591 ctttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttt 36721657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 1696186 - 1696283
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 114  Q
    ||||||| ||||||||||||||| |  ||||||| | ||||||||||||||||  ||| |||||||||| |||| ||||  |||||| | ||||||||    
T  1696186 ttaagacttttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatcttctttta 1696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 38494777 - 38494829
Alignment:
Q  38 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  38494777 ttatcataaaaatatgtgtaatcaatgcatcgaaaatcgaaagatttgccttt 38494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 5387904 - 5388022
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgta--atcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 113  Q
    |||||||| ||||||| ||||| | | ||||| |||| ||||  |||||||||| || ||||||||||||| | ||| |  ||||||||||| |||||||    
T  5387904 gttaagacttttaaatggtaacgttttatgaatatatatgtacaatcaatgcattgaaaatcgaaatatttaattttttattaaaataatttcttctttt 5388003  T
Q  114 agaatctttaaagagtgtc 132  Q
    | |||||||| | ||||||    
T  5388004 aaaatctttataaagtgtc 5388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 31871090 - 31871149
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 113  Q
    ||||||||||||||||  ||| ||||||||| ||||| |||||||||||||| |||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttctttt 31871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 53919936 - 53919863
Alignment:
Q  57 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||||||||||||  ||| ||||| ||||||||| ||||| ||||||||||||||||  |||  ||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtg 53919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 27346385 - 27346293
Alignment:
Q  38 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    ||||||| ||||| ||| |||| |||||| |   |||| |||| ||||||||| ||||||||||| || || |||||||||| ||||||||||    
T  27346385 ttatcataaaaatgtgtataataaatgcaccagaaatcaaaatctttgacttttttataaaataaattctttttttagaatccttaaagagtg 27346293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 27981483 - 27981368
Alignment:
Q  18 taagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt-aga 116  Q
    ||||| ||||||||||||||||   ||| ||||||||||||| |||| || || ||| ||||||||| | ||| | ||||| |||||| || |||| | |    
T  27981483 taagatctttaaatagtaactttgtatgtaaatatgtgtaattaatgtattgaaaattgaaatatttaattttttcataaattaatttttttttttaaaa 27981384  T
Q  117 atctttaaagagtgtc 132  Q
    || |||||||||||||    
T  27981383 atttttaaagagtgtc 27981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 41370160 - 41370239
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||| |||||  |||| |||||||| || | |||||||| |||||||||||||||| || ||| ||||||||| |||||    
T  41370160 cactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttt 41370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 51106020 - 51105918
Alignment:
Q  27 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 126  Q
    ||||||||||||  | ||||||||||| ||||||  || || || |||  |||||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  51106020 taaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttgacttttttaaataataattgtttattttagaatatttaaag 51105921  T
Q  127 agt 129  Q
    |||    
T  51105920 agt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 27706954 - 27707003
Alignment:
Q  76 gaaatatttgactttattataaaataatttattcttttagaatctttaaa 125  Q
    ||||||||||||||| ||||||||| |||| || |||||||||| |||||    
T  27706954 gaaatatttgactttcttataaaatgatttcttattttagaatcattaaa 27707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 44088272 - 44088211
Alignment:
Q  94 ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||||||||||| |||||||||||| |||||| | ||   |||||||||| |||||||||||    
T  44088272 ataaaataatttcttcttttagaatttttaaaaattgctccggaggcactcgttaacaagac 44088211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 52650697 - 52650826
Alignment:
Q  26 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 125  Q
    ||||||||||| || | |||||||  |||||||||| || || || ||| ||||  |||||| ||  || | |||||||| ||  ||||| || ||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaa 52650796  T
Q  126 gagtgtctcggaggcactggttaacaagac 155  Q
    ||||||  |||||||||| |||||||||||    
T  52650797 gagtgttccggaggcactcgttaacaagac 52650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 11875452 - 11875539
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||||||| ||| |||||||||||| || |||  |||||||| | |||  ||||||||||||| || ||||| || |||||||||||||    
T  11875452 atgaaaatgtgtataatcaatgcattgaaaatt-aaatatttaatttttgtataaaataatttctttttttaaaagctttaaagagtgt 11875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 23230272 - 23230372
Alignment:
Q  56 taatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 154  Q
    |||||||||||| || ||| |||| |||| ||||| || ||  |||||||| | ||||| ||||  |||||||||||||||||| |||| ||||| ||||    
T  23230272 taatcaatgcattgaaaattgaaacatttaacttttttcatggaataatttctccttttggaatgcttaaagagtgtctcggagacactcgttaataaga 23230371  T
Q  155 c 155  Q
    |    
T  23230372 c 23230372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 47560707 - 47560596
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    ||||||||  |||||||||||| ||  | |||| ||| |||||| ||| ||| |||||||||  || |||| ||||  ||||||||||||||| || |||    
T  47560707 atgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttgattttttta-aaaataattgcttattttggaatgattaaagagtgtctcgaagacac 47560609  T
Q  143 tggttaacaagac 155  Q
    | |||||||||||    
T  47560608 tcgttaacaagac 47560596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 34759043 - 34758899
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||  |||||||||||||||||||||| |||||| |||||||||||||||  || ||||||||||| ||||| |||||||||||||  ||||    
T  34759043 cactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattacttct 34758944  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||| ||||| |||||||||| | |||||||||| |||||||||||    
T  34758943 ttttgaatccttaaagagtgccccggaggcactcgttaacaagac 34758899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 30687084 - 30687214
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||| | |||| || | ||||| ||| |||||| ||||||| ||||||||||||| |||    
T  30687084 ctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttcttcttttagaatcctta 30687183  T
Q  124 aagagtgtctcggaggcactggttaacaaga 154  Q
    |||||| |||| ||| |||| ||||||||||    
T  30687184 aagagtatctctgagacactcgttaacaaga 30687214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 38388812 - 38388694
Alignment:
Q  25 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 124  Q
    |||||||||||| || | || |||||||||||||||||||||  || |||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  38388812 tttaaatagtaaatttttataaaaatatgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttcttcttttagaatctttaa 38388713  T
Q  125 agagtgtctcggaggcact 143  Q
    | |||| | ||||||||||    
T  38388712 atagtgccccggaggcact 38388694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 27968307 - 27968170
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 114  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||| |||| |||| |||| |||||||     
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttg 27968209  T
Q  115 gaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||| ||||| |||||| ||| |||||| |||||||||||    
T  27968208 gaatccttaaaaagtgtc-cgg-ggcactcgttaacaagac 27968170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 52340118 - 52340257
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttta 114  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| |||||  ||| ||||||||| |||| ||| |||     
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttg 52340217  T
Q  115 gaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||| |||||||||| |||||| | ||| |||||||||||    
T  52340218 gaatccttaaagagtgcctcgga-gaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 18399156 - 18399271
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttattctttta 114  Q
    |||||| | ||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||| |||| ||||| |||| |||||||     
T  18399156 gttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttcttcttttg 18399255  T
Q  115 gaatctttaaagagtg 130  Q
    ||||| ||||||||||    
T  18399256 gaatccttaaagagtg 18399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 54912014 - 54912133
Alignment:
Q  35 aacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctc 134  Q
    ||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||| |||||||||| ||||||||||| ||||  ||||||||||  ||    
T  54912014 aacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttattcttttggaattcttaaagagtgcttc 54912113  T
Q  135 ggaggcactggttaacaaga 154  Q
    || | |||| ||||||||||    
T  54912114 ggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 28434591 - 28434481
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 143  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||| ||| |||| |||||||||||| |||  |||||    
T  28434591 tgaaaatttatgtaatcaatgcatcgaaaatcaaaatatttgacttt-ttatgaaataatttattctcttaaaatccttaaagagtgtcccgggagcact 28434493  T
Q  144 ggttaacaagac 155  Q
     |||||||||||    
T  28434492 cgttaacaagac 28434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 38704947 - 38705086
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    ||||| ||||||||||   || |||||||  |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||| ||||||| |    
T  38704947 gttaaaacctttaaatgacaatttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttg 38705046  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||  |||||||||   |||| |||||| |||||||||||    
T  38705047 aattcttaaagagtacttcgggggcactcgttaacaagac 38705086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 779710 - 779810
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    |||||| ||||||| |  |||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  779710 tgtaatgaatgcattgcaaatcaaaatatttaactttttcataaaataatttattcttttagaatttttaaagagtgtct-ggaggcactcgttaacaag 779808  T
Q  154 ac 155  Q
    ||    
T  779809 ac 779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 7754774 - 7754871
Alignment:
Q  23 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatc 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||| ||| ||||||||| | || ||||||| |||||    
T  7754774 cctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttttataaaattacttcttcttttggaatc 7754871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 19898100 - 19898191
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 108  Q
    |||||||||||| || |||| || | ||||||||||||||||||||||||| || ||| ||||||||||| |||  ||||||||||||||||    
T  19898100 ttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataatttatt 19898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 25548196 - 25548333
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 115  Q
    |||||||||||||||  ||| || | |||||||||||||||||||||||||    ||| ||||||||| || ||| |||||||||| ||| |||||||||    
T  25548196 ttaagacctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaactttttttataaaatattttcttcttttag 25548295  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaaga 154  Q
    | || ||||||||||| |||| || ||| ||||||||||    
T  25548296 agtccttaaagagtgt-tcgggggtactcgttaacaaga 25548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 4033138 - 4033026
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||| |||||||||   || ||||||||||||| |||||||||| |||||||  ||||||||| ||||| ||| |||||||||||||| || |||||||    
T  4033138 ttaagtcctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttctttttttaga 4033040  T
Q  117 atctttaaagagtg 130  Q
    ||| ||||| ||||    
T  4033039 atccttaaaaagtg 4033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 55110109 - 55110042
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  55110109 atgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattttttct 55110042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 43749507 - 43749581
Alignment:
Q  52 tgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 126  Q
    ||||||||||||  || || ||| ||||||||||||||| | ||| |||||||||||||||||||||| ||||||    
T  43749507 tgtgtaatcaatatatagaaaattgaaatatttgactttttaatagaataatttattcttttagaatccttaaag 43749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 53433211 - 53433281
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 114  Q
    ||||||| | ||||||||||||||||| |||  |||||||||||||| ||||| |||||||| ||||||||    
T  53433211 tgaaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttctttta 53433281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 1680511 - 1680566
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 127  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  1680511 aatcaaaatatttgacttttttataaattaatttattctttttgaatccttaaaga 1680566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 2831629 - 2831538
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctc 134  Q
    |||||||  ||| |||||| |||||  | ||| ||||||||||||||||||| |||||||||| ||  ||| ||||| ||||||||||||||    
T  2831629 atgaaaacttgtataatcattgcatttaaaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtctc 2831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 39976804 - 39976721
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||||| |||||||||||| || || ||| |||| |||||||||| ||| ||||||||| ||| ||||||||| || ||||||||    
T  39976804 aaaatacgtgtaatcaatgtattgaaaatagaaacatttgactttttta-aaaataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 54955783 - 54955859
Alignment:
Q  35 aacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttat-tataaaataatttattct 110  Q
    ||||| |||||||||||| ||||||  ||||||| | |||| |||||||||| ||| | ||||||||||||||||||    
T  54955783 aacttttcatgaaaatatatgtaatttatgcatcaaaaatcaaaatatttgattttttctataaaataatttattct 54955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 11404754 - 11404700
Alignment:
Q  77 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||||||| ||||| ||||||||||||||||| ||||  |||||| |||||||||    
T  11404754 aaatatttaacttttttataaaataatttatttttttttaatcttaaaagagtgt 11404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 104  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 29497248 - 29497285
Alignment:
Q  118 tctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  29497248 tctttaaagaatgtctcggaggcactcgttaacaagac 29497285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 29612035 - 29611990
Alignment:
Q  110 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  29612035 ttttagaatgtttaaagagtgtcccgggggcactcgttaacaagac 29611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 21490626 - 21490682
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 99  Q
    |||||||||||||| ||||||| || || ||| ||||||||||||||| ||| ||||    
T  21490626 atgaaaatatgtgtcatcaatgaattgaaaattgaaatatttgacttttttacaaaa 21490682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 30463992 - 30464056
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 118  Q
    ||||||||||||||  | ||| ||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttcttcttttggaat 30464056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 37775371 - 37775411
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttt 112  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  37775371 aatcgaaatatttaacttttttataaaataatttcttcttt 37775411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 8247168 - 8247037
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    |||||||| |||||||||||||||||  ||| ||||||||||||||  ||||||||||||||||||| ||||||||| |||| ||||||| ||||| |||    
T  8247168 ctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatcctta 8247069  T
Q  124 aagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||| ||| |||||| |||||||||||    
T  8247068 aagagtgtcacgggggcactcgttaacaagac 8247037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 3263861 - 3263717
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||  |||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||| ||||    
T  3263861 cactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttct 3263762  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||  |||  |||||||||| | |||| ||||| |||||||||||    
T  3263761 tttgaaattcttaaagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 19692838 - 19692696
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattc 109  Q
    |||| |||||| ||||||||| |||||||||||| ||| |||||||||||||||||| || |||||||||||||||| ||| ||||||| |||||| |||    
T  19692838 cactggttaaggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttcttc 19692739  T
Q  110 ttttagaatctttaaagagtgtctcggaggcactggttaacaa 152  Q
    ||||  ||||||||||||||| | ||| | |||| ||||||||    
T  19692738 ttttgaaatctttaaagagtgccccggggacactcgttaacaa 19692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 35395302 - 35395184
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||| |||||| ||| | |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||| ||| ||||    
T  35395302 cactcgttaacaccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttcttct 35395203  T
Q  111 tttagaatctttaaagagt 129  Q
    ||| ||||| |||||||||    
T  35395202 tttggaatccttaaagagt 35395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 5356303 - 5356406
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||| || |||| | ||| |||    
T  5356303 ctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttcttattttggtatcctta 5356402  T
Q  124 aaga 127  Q
    ||||    
T  5356403 aaga 5356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 10051844 - 10051700
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||||||||||||| ||||||||| |||||||  ||| ||||||||||||||  |||  |||||||||||||| ||||||||| |||| ||||    
T  10051844 cactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttct 10051745  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||| |||| |||||||||| ||  | | |||| |||||||||||    
T  10051744 tttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 28793435 - 28793305
Alignment:
Q  25 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 124  Q
    ||||||| |||| ||||||| ||||||| |||||| |||||||||  ||||||||||||||||||| ||||||||| |||| ||||||| ||||| ||||    
T  28793435 tttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaa 28793336  T
Q  125 agagtgtctcggaggcactggttaacaagac 155  Q
    |||| |   |||| ||||| |||||||||||    
T  28793335 agagcgcaccggaagcactcgttaacaagac 28793305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 1354345 - 1354481
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| ||||||||  |||| ||||||||||||||| | ||||||||  ||    ||||||||||||| ||||| |||||||||||||| || ||||||    
T  1354345 gttaaggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttctttttttag 1354444  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    ||| | | |||||||||||||||||||| |||||||||    
T  1354445 aat-tcttaagagtgtctcggaggcacttgttaacaag 1354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 21582463 - 21582367
Alignment:
Q  34 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    ||||||||||||||||| ||||| |||| || |||   ||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  21582463 taacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataatttattcttttggaatccttaaaaagtg 21582367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 14042542 - 14042440
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 145  Q
    ||||| ||| |||||||||||| |  |||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || ||||| |||| |    
T  14042542 aaaatttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataatttattattttagaatctttaaagagtatcccggagacactcg 14042443  T
Q  146 tta 148  Q
    |||    
T  14042442 tta 14042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 22473549 - 22473432
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattc 109  Q
    |||| ||||||  |||||||| |||||||||| |||||||||||||||||||||||||   |||  ||||||||||  ||| |||||||||||||| |||    
T  22473549 cactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttcttc 22473450  T
Q  110 ttttagaatctttaaaga 127  Q
    ||||  |||| |||||||    
T  22473449 ttttgaaatccttaaaga 22473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 31889709 - 31889611
Alignment:
Q  32 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatctttaaagagt 129  Q
    |||||||| | |||||||||||||||||||||||||    ||| ||||||||| || ||| ||||||| |||||| ||||||||||||| |||||||||    
T  31889709 agtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaagagt 31889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 4725897 - 4725979
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||| ||||||||| ||||||||||||||||||||||  |||| ||||| ||||| |||| | |||| |||||||||||    
T  4725897 aatcgaaatctttgacttt-ttataaaataatttattcttttgaaatccttaaacagtgtttcggggacactcgttaacaagac 4725979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 14474998 - 14475133
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||| |||||||||||| |  ||||||| | ||||||||| |||||   ||| |||||||||||| || ||||| |||||||| |||||||| |    
T  14474998 ttaagaccttcaaatagtaactttttttgaaaatttatgtaatcaaagcatctgaaattgaaatatttgacatttttatagaataatttcttcttttaaa 14475097  T
Q  117 atctttaaagagtgtctcggaggcactggttaacaa 152  Q
    ||  || ||||| | | |||| ||||| ||||||||    
T  14475098 atgcttgaagagagccccggaagcacttgttaacaa 14475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 22871967 - 22871913
Alignment:
Q  78 aatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 132  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  22871967 aatatttgacttttttataaaatattttcttcttttagaatccttaaagagtgtc 22871913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 3758279 - 3758194
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||| |||| || ||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||| ||| ||||||||||||    
T  3758279 aaaaaatgtatattcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgt 3758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 142352 - 142436
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 100  Q
    |||||| ||||||||  |||||||||||| ||| ||||||||||||||| |||   ||| ||||||||||| ||| |||||||||    
T  142352 gttaagccctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 26663714 - 26663642
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 118  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26663714 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 26935309 - 26935237
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 118  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26935309 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 27650806 - 27650944
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||||| |||||||||||| |  |  ||| ||| | |||||| |||| ||||| |||  |||||||| ||||| ||||| |||||||| || |||| |    
T  27650806 gttaagacttttaaatagtaattatttttgataatttatgtaattaatgtatcga-aattaaaatatttaacttttttatataataatttctttttttgg 27650904  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||| ||||||||||||  |||||| ||| |||||||||||    
T  27650905 aatgtttaaagagtgttccggaggtactcgttaacaagac 27650944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 37976497 - 37976444
Alignment:
Q  76 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 129  Q
    ||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||    
T  37976497 gaaatatttgatttttttatgaaataatttcttcttttagaatgtttaaagagt 37976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 12933381 - 12933327
Alignment:
Q  77 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||||||||||||| ||||||||||||||||| ||||  |||| || ||||||||    
T  12933381 aaatatttgactttcttataaaataatttattattttgaaatcgttgaagagtgt 12933327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 24241210 - 24241256
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttttagaat 118  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  24241210 aatcgaaatatttgactttttattaaaataattttttcttttagaat 24241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 24241039 - 24241096
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 103  Q
    ||||||||| ||||||||| ||  | ||| ||||||||||||||| ||||||||||||    
T  24241039 aaaatatgtataatcaatgtattaaaaattgaaatatttgacttttttataaaataat 24241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 8789970 - 8789826
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||  |||||||  |||||||| |||||||||||||||||||||||||||   |||| |||||||| ||||| |||||||||||||| ||||    
T  8789970 cactggttaaggtctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttcttct 8789871  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||||||||||||||||||||| || | | ||| |||||||||||    
T  8789870 tttagaatctttaaagagtgtcccgaaagtactcgttaacaagac 8789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 20683011 - 20683133
Alignment:
Q  33 gtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 132  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||  ||| ||||||| ||||| ||||||||||||    
T  20683011 gtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttcttttggaatccttaaagagtgtc 20683110  T
Q  133 tcggaggcactggttaacaagac 155  Q
     ||| |||||| |||||||||||    
T  20683111 ccgggggcactcgttaacaagac 20683133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 44941073 - 44941216
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||| ||||||||| |||| |||||| |||||||| ||||||||||||||||  ||||||||| ||| ||||| |||||| ||| ||| ||||    
T  44941073 cactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttct 44941172  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||| |||||||||||||| | |||||| |||||||||||    
T  44941173 tttagaatccttaaagagtgtctcag-ggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 4238341 - 4238438
Alignment:
Q  34 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 132  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  4238341 taacttat-atgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcttctttttgaatccttaaagagtgtc 4238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 8773678 - 8773784
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    |||||||  |||||||| ||||||||||| |||||||||||||||   |||| |||||||||||||| |||||||||||||| |||||||||||||||||    
T  8773678 ctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttagaatcttta 8773777  T
Q  124 aagagtg 130  Q
    |||||||    
T  8773778 aagagtg 8773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 18053015 - 18053130
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| ||||||||  |||| ||||||||||| ||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||| |||||||      
T  18053015 gttaaggcctttaaag-gtaatttatcatgaaagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttcttcttttga 18053113  T
Q  116 aatctttaaagagtgtc 132  Q
    |||| ||||||||||||    
T  18053114 aatccttaaagagtgtc 18053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 2393038 - 2393148
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||||| ||||||||||   ||||||| ||||| ||||||||  | ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  2393038 ttaagacctttatatagtaactttgtatgaaaacatgtgaaatcaatgtcttgagaatcaaaatatttgacttttttataaattaatttcttcttttaga 2393137  T
Q  117 atctttaaaga 127  Q
    ||| |||||||    
T  2393138 atccttaaaga 2393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 6761724 - 6761862
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||||||||||||  ||| ||| |  ||||||| | |||||||||||||| |  ||| ||||||||||||||| ||||| ||| |||||||||||| ||    
T  6761724 ttaagacctttaaaatgtatctttttttgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttgga 6761823  T
Q  117 atctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||  |||||||||| |||||| ||||| |||||||||||    
T  6761824 atgcttaaagagtgcctcggaagcacttgttaacaagac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 34546265 - 34546379
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    ||||||||| ||||||  ||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||| ||||||| |||||| ||| ||| |    
T  34546265 gttaagaccattaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttgg 34546364  T
Q  116 aatctttaaagagtg 130  Q
    |||| | ||||||||    
T  34546365 aatcctcaaagagtg 34546379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 42945012 - 42945125
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||||||||  |  ||||||||||||||| ||| | |||||||||| | |||||||| |    
T  42945012 ttaaggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaa 42945111  T
Q  117 atctttaaagagtg 130  Q
    ||| ||||| ||||    
T  42945112 atccttaaaaagtg 42945125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 42967066 - 42966938
Alignment:
Q  17 ttaagacctttaaatagtaa-cttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattctttta 114  Q
    ||||||||||||||||||||  || |  ||||||| | |||||||||||||||| |||| ||||||||| || ||| |||| ||||||||| ||||||||    
T  42967066 ttaagacctttaaatagtaatttttttttgaaaatttatgtaatcaatgcatcgggaattgaaatatttaactttttttatgaaataatttcttctttta 42966967  T
Q  115 gaatctttaaagagtgtctcggaggcact 143  Q
    | ||  |||||||||||||||||||||||    
T  42966966 gtattcttaaagagtgtctcggaggcact 42966938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 1070639 - 1070568
Alignment:
Q  45 gaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaa 117  Q
    ||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| |||||||||||||    
T  1070639 gaaaatatgtgtaatcaat-cattgaaaatcaaaatattttactttattataaaataatatattcttttagaa 1070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 5961961 - 5962101
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataattta-ttctttta 114  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||||| |  ||| ||||||||| | ||| || ||  |||| |||  ||||||||    
T  5961961 ttaagacctttaaatagtaactgtttttgaaaatttatgtaatcaatgcattggaaattgaaatatttaattttttttatggaatatttttcttctttta 5962060  T
Q  115 gaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||  ||||||||||||||||||||||| |||||||||||    
T  5962061 gaatgcttaaagagtgtctcggaggcactcgttaacaagac 5962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 3882700 - 3882586
Alignment:
Q  41 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggc 140  Q
    |||||||||| |||||||||||||||| || || ||||||||||||| || ||| | |||||||  || |||||||||  |||||||||| | ||  |||    
T  3882700 tcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggc 3882601  T
Q  141 actggttaacaagac 155  Q
    ||| |||||||||||    
T  3882600 actcgttaacaagac 3882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 433551 - 433643
Alignment:
Q  60 caatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt-ctcggaggcactggttaacaa 152  Q
    ||||||||| | |||| |||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||    
T  433551 caatgcatcaaaaatcaaaatatttaacttttttataaattaatttattcttttggaatccttaaagagtgtcctcgg-ggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 8898861 - 8898913
Alignment:
Q  79 atatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||    
T  8898861 atatttgactttattataaaataatttcttattttagaatcattaaagggtgt 8898913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 18227204 - 18227092
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    |||||||| | | |||||||||||| || |||||||||||||||||||  |  | |||||||  || ||||| ||| ||||||||||||  ||||| |||    
T  18227204 atgaaaatgtatttaatcaatgcattgaaaatcgaaatatttgacttttatgaagaataattacttattttataatgtttaaagagtgttccggagacac 18227105  T
Q  143 tggttaacaagac 155  Q
    | |||||||||||    
T  18227104 tcgttaacaagac 18227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 35228848 - 35228732
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    ||||| |||||||||||||||  | ||||   ||||||||||||||||| |||||||    |||||||||||||||  || ||| |||||||||| ||||    
T  35228848 cactttttaagacctttaaatgattactttatatgaaaatatgtgtaataaatgcattagaaatcgaaatatttgatctttttagaaaataatttcttct 35228749  T
Q  111 tttagaatctttaaaga 127  Q
    |||  |||| |||||||    
T  35228748 tttgaaatccttaaaga 35228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 2825983 - 2826066
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 129  Q
    ||||| |||||||||||||||| |  ||||||||||||| ||||| ||| |||||||||| || |||||| ||  |||||||||    
T  2825983 aaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 7271887 - 7271769
Alignment:
Q  18 taagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac----tttattataaaataatttattctttt 113  Q
    |||||| |||||||  |||||| | |||||||||| |||||||||||||| |  |||  |||||||||||    ||| |||||| ||| ||| || ||||    
T  7271887 taagacttttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaatatttgacttttttttttataagatagtttcttttttt 7271788  T
Q  114 agaatctttaaagagtgtc 132  Q
    |||||| ||||||||||||    
T  7271787 agaatccttaaagagtgtc 7271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 13442636 - 13442703
Alignment:
Q  76 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 143  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||   |||||||||||    
T  13442636 gaaatatttaactttttttataaaataatttattctttt-gaatctttaaagagtacttcggaggcact 13442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 3199541 - 3199599
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||| |||||||||| ||| |||||||||||||| || |||||||||  ||||||||||    
T  3199541 aatcaaaatatttgaattttttataaaataatttcttattttagaattattaaagagtg 3199599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 26025761 - 26025871
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||||| ||||||||||   ||||||| || |||||||||||  | |  |||| |||| ||||  ||| || |||| |||||| ||||||||||    
T  26025761 ttaagacctttatatagtaactttgtatgaaaacatatgtaatcaatgtcttggaaatcaaaatgtttgttttttttttaaattaatttcttcttttaga 26025860  T
Q  117 atctttaaaga 127  Q
    ||| |||||||    
T  26025861 atccttaaaga 26025871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 31448315 - 31448400
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||||||| ||||| |||| ||||  |||| |||| ||| | ||| |||||||||||||| ||||||   ||||||||||||||||    
T  31448315 aaaatatgagtaattaatgtatcggaaatcaaaatttttaaattttttataaaataatttcttctttagaaatctttaaagagtgt 31448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 45212110 - 45212057
Alignment:
Q  72 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 125  Q
    |||| |||||||||| ||| ||||||||||||||||  |||||||||| |||||    
T  45212110 aatcaaaatatttgatttttttataaaataatttatctttttagaatccttaaa 45212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 14102323 - 14102435
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattata-aaataatttattcttttagaatctttaaagagtgtctcggaggca 141  Q
    |||||||  ||||||||||||| || |  ||||||||||||| ||||| || |  ||||||||| || |||| | || |||||||||||   ||||||||    
T  14102323 atgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttggcatgtttaaagagtgctccggaggca 14102422  T
Q  142 ctggttaacaaga 154  Q
    || ||||||||||    
T  14102423 ctcgttaacaaga 14102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 33275918 - 33276005
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 131  Q
    |||||||| |||||| || ||| || || ||| ||||||||| ||||| ||| |||||||||| || |||||||||  |||||||||||    
T  33275918 atgaaaatgtgtgta-tctatgtattgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 30412912 - 30413030
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||| |||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||    
T  30412912 cactggttaaggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttcttct 30413011  T
Q  111 tttagaatctttaaagagt 129  Q
    |||  |||| |||||||||    
T  30413012 tttgaaatccttaaagagt 30413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 48137883 - 48137789
Alignment:
Q  25 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatc 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||| |||||    
T  48137883 tttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttcttcttttggaatc 48137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 8170145 - 8170001
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||  ||||||| |||||||||||||||| |||||| ||||||||| ||||  |||| |||||||||||||| |||||||||||||| ||||    
T  8170145 cactagttaaggtctttaaaaagtaacttatcatgaacatatgtataatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttcttct 8170046  T
Q  111 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||| ||||| |||||||||||  |||  | ||| |||||||||||    
T  8170045 tttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 42493798 - 42493703
Alignment:
Q  36 acttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttattcttttagaatctttaaagagtg 130  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  42493798 acttatcatgaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtg 42493703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 47507711 - 47507580
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    |||||||| ||||||| ||||||||| ||||||||||||| |||||  ||| ||||| ||||| ||| ||||||||| |||| ||||||||||||| |||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  124 aagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||| | ||||| |||| |||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagac 47507580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 16878815 - 16878677
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||| ||||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||||| |  || | ||    
T  16878815 ttaatacctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttctctttattga 16878716  T
Q  117 atctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||||||||||||||| ||||  |||  |||||||||||    
T  16878715 atctttaaagagtgtcccggaaacacctgttaacaagac 16878677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 2964146 - 2964049
Alignment:
Q  28 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 125  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||| | ||| |||||||||||||| |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttcttcttttagaatctttaaa 2964049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 44391426 - 44391537
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 115  Q
    ||||||||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44391426 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 44391524  T
Q  116 aatctttaaagag 128  Q
    |||||||||||||    
T  44391525 aatctttaaagag 44391537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 5248179 - 5248088
Alignment:
Q  41 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 132  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||  |||| ||||||| ||||    
T  5248179 tcataaaaatatgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagaatgtc 5248088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 38452280 - 38452146
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| ||||||||   ||| |||| |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||||| |||||||      
T  38452280 gttaaggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttcttttta 38452181  T
Q  116 aatctttaaagagtgtctcggaggcactggttaaca 151  Q
    |||| ||||||| ||| |||| |||||| |||||||    
T  38452180 aatccttaaagaatgt-tcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 2741260 - 2741168
Alignment:
Q  38 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||| |||||||||||||||||||||||||||  |||| |||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||    
T  2741260 ttattatgaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaagagtg 2741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 46684553 - 46684626
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt 89  Q
    |||||| ||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  46684553 gttaaggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 43670512 - 43670409
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    |||||||| |||| ||||||| |||| || |||||||| |||||||| |||| |||| ||||| ||| ||||||||| |||| ||| |||| ||||||||    
T  43670512 ctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttcttcatttaaaatcttta 43670413  T
Q  124 aaga 127  Q
    ||||    
T  43670412 aaga 43670409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 676400 - 676488
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcg 135  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||| |||  ||||||||  || ||||||||| ||||||||||||||||    
T  676400 aaaatatgtgtaatcaatgcatttaaaatcgaaatatttaacttt-ttaataaataattacttattttagaatgtttaaagagtgtctcg 676488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 15034795 - 15034911
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaa-tgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 114  Q
    |||||| ||||||||  ||||||||| ||||||||| |||||||||| ||||| |   |||||||||||||||||| |||||||||| ||| || | ||     
T  15034795 gttaaggcctttaaaaggtaacttattatgaaaatacgtgtaatcaaatgcattggatatcgaaatatttgacttt-ttataaaatattttcttttcttg 15034893  T
Q  115 gaatctttaaagagtgtc 132  Q
    ||||| ||||||||||||    
T  15034894 gaatccttaaagagtgtc 15034911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 37352436 - 37352535
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 143  Q
    ||||||| |||||||| ||||||| |  ||| ||||||||||||||| | ||  |||||||| || |||| ||||| ||||||| |||||||||||||||    
T  37352436 tgaaaatttgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaagaatgtctcggaggcact 37352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 33887887 - 33887971
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggag 138  Q
    |||||||||||||| || ||| ||||||||||||||| ||| | |||||||  || |||| ||||  ||||||||||||||||||    
T  33887887 tgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgtctcggag 33887971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 45375399 - 45375483
Alignment:
Q  72 aatcgaaatatttgactttattataaaataa-tttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||| |||||||| ||||| |||||| |||| ||| ||||||||||||| |||||||||| | |||||||||| ||||| |||||    
T  45375399 aatcaaaatatttaacttttttataacataagtttcttcttttagaatccttaaagagtgccccggaggcactcgttaataagac 45375483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 47305532 - 47305592
Alignment:
Q  25 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaa-tcgaaatattt 84  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||    
T  47305532 tttaaatggtaacttatcatgaaaatatgtgtaatctatggatcgaaaattcgaaatattt 47305592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 15995971 - 15995924
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||    
T  15995971 atgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaacttt 15995924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 36285775 - 36285887
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttta 114  Q
    |||||| ||||||||  |||||||||||| ||||||  ||||||||||| ||||  |||| ||||||||||  ||| |||||||||  ||| ||||||||    
T  36285775 gttaagtcctttaaaatgtaacttatcataaaaata--tgtaatcaatgtatcggaaatcaaaatatttgattttttttataaaatgctttcttctttta 36285872  T
Q  115 gaatctttaaagagt 129  Q
     ||| ||||||||||    
T  36285873 aaatttttaaagagt 36285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 44495320 - 44495238
Alignment:
Q  21 gacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 103  Q
    ||||| |||||| |||||| | || ||||||||||||||||||| ||  | ||||||||||||| | ||| ||||||||||||    
T  44495320 gacctgtaaataataacttgttataaaaatatgtgtaatcaatgaattaaaaatcgaaatatttaaattttttataaaataat 44495238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 35754126 - 35754017
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    ||||||| ||||||||| ||||||| || |||||||||| |||| | | |||||||||||||| || ||||  |||  ||||||||||| || ||| |||    
T  35754126 atgaaaacatgtgtaattaatgcattgaaaatcgaaatacttgattattttataaaataatttctttttttgaaattcttaaagagtgtttcagagacac 35754027  T
Q  143 tggttaacaa 152  Q
    | ||| ||||    
T  35754026 tcgttgacaa 35754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 36015032 - 36015141
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 145  Q
    |||||| |||||||||||  || || ||| || |||||||| ||| |||||||||||||| || ||||  |||| ||||||| |||| ||||| || | |    
T  36015032 aaaatacgtgtaatcaataaattgaaaattgacatatttgatttttttataaaataatttctttttttgaaatccttaaagaatgtcccggagacattcg 36015131  T
Q  146 ttaacaagac 155  Q
    ||||||||||    
T  36015132 ttaacaagac 36015141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 27359466 - 27359398
Alignment:
Q  17 ttaagacctttaaatagtaac-ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt 84  Q
    ||||||||||||||||||||| || | ||||||| | ||||||||||||||| |  |||||||||||||    
T  27359466 ttaagacctttaaatagtaacttttttatgaaaacaagtgtaatcaatgcattggaaatcgaaatattt 27359398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 14574815 - 14574768
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  14574815 atgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaacttt 14574768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 35599837 - 35599944
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    |||| ||||||||| || | | ||| ||||||| ||| ||| | ||||||||  |  ||||| || |||||||||| ||||||||||||| |||||||||    
T  35599837 tgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatctcggaggcactcgttaacaag 35599936  T
Q  154 acaattaa 161  Q
    || |||||    
T  35599937 accattaa 35599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 11678108 - 11678038
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga 86  Q
    ||||||| |||||||  |||| |||| ||||||||| ||||||| |||||||||  ||| |||||||||||    
T  11678108 gttaagatctttaaaaggtaatttataatgaaaatacgtgtaattaatgcatcggaaattgaaatatttga 11678038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 31477175 - 31477085
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt-attcttttagaatctttaaagagtgtc 132  Q
    ||||||||||||||||||||||||| || |||| |  | |||||| || ||||| ||||||||  || |||||||||| ||||| ||||||    
T  31477175 atgaaaatatgtgtaatcaatgcattgaaaatcaatttttttgacgtttttatacaataatttcttttttttagaatccttaaatagtgtc 31477085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 10031945 - 10032058
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    |||||||  |||||||||||||||| |  |||||||| |||| ||||| | | |||||||||  |  |||| ||||  |||||||||||| ||| |||||    
T  10031945 atgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcac 10032044  T
Q  143 tggttaacaagaca 156  Q
    | |||||| |||||    
T  10032045 tcgttaacgagaca 10032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 25120218 - 25120271
Alignment:
Q  80 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 133  Q
    ||||||||||| ||| |||||||||||||  |||  ||||||||||||||||||    
T  25120218 tatttgacttttttaaaaaataatttattaatttgaaatctttaaagagtgtct 25120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 31206419 - 31206280
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||| | ||||| |    
T  31206419 gttaaggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttctactttttg 31206320  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||| |||||||||  ||||  || ||| |||||||||||    
T  31206319 aatccttaaagagtacctcgtggggactcgttaacaagac 31206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 38956985 - 38956884
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 123  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||   |||||||||||| |||    
T  38956985 ctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaattacatcttttagaatcctta 38956886  T
Q  124 aa 125  Q
    ||    
T  38956885 aa 38956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 45368729 - 45368834
Alignment:
Q  25 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 124  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  125 agagtg 130  Q
    ||||||    
T  45368829 agagtg 45368834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 20169716 - 20169827
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 115  Q
    ||||||||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  20169716 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 20169814  T
Q  116 aatctttaaagag 128  Q
    |||||||||||||    
T  20169815 aatctttaaagag 20169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 5217750 - 5217869
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| ||||||| ||||| || |||| ||||||| |||||||||||||||||| |||||  ||||||||||||||||||| ||||||||| ||||||  |    
T  5217750 cactagttaagatctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcatttat--t 5217847  T
Q  111 tttagaatctttaaagagtgtc 132  Q
    ||| ||||| ||||||||||||    
T  5217848 ttttgaatccttaaagagtgtc 5217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 5020051 - 5020162
Alignment:
Q  16 gttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 115  Q
    |||||| ||||||||| ||||||| ||||||||||  |||||||||||| ||||  ||| ||||| ||||||||| ||||||||| |||| |||||||||    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaat--gtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttag 5020148  T
Q  116 aatctttaaagagt 129  Q
    |||| |||||||||    
T  5020149 aatccttaaagagt 5020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 7044329 - 7044442
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||||| ||| ||||||   ||||||| | |||||||||| || |  | ||||||||| ||||||||| | ||||| |||||| ||||||||||    
T  7044329 ttaagacctttatataataactttgtatgaaaacacgtgtaatcaaagccttaaaaatcgaaatgtttgactttttaataaattaatttcttcttttaga 7044428  T
Q  117 atctttaaagagtg 130  Q
    ||| ||||||||||    
T  7044429 atccttaaagagtg 7044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 9633030 - 9632898
Alignment:
Q  24 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta--ttcttttagaatctt 121  Q
    |||||||| | || |||| ||||||||||||||||||||||||||   |||| |||||||||||||| || || |||  ||||  || ||||  ||||||    
T  9633030 ctttaaatggcaatttattatgaaaatatgtgtaatcaatgcatctgaaatcaaaatatttgacttt-ttttataattttttatttttttttgaaatctt 9632932  T
Q  122 taaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||| | ||||| |||| |||||||||||    
T  9632931 taaagagtgacccggagacacttgttaacaagac 9632898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 33636767 - 33636685
Alignment:
Q  76 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaat 158  Q
    |||| |||||||||| |||| ||||||||| | ||||||||||  ||||||||||||||||  ||||| ||||| ||||||||    
T  33636767 gaaacatttgacttttttatgaaataatttctccttttagaatgcttaaagagtgtctcgggcgcactcgttaataagacaat 33636685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  26 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 125  Q
    ||||||||||| || | |||||||| |||||| ||||||||| || ||| ||| ||||||||||| ||| | |||||||| ||  | | ||||  |||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  126 gagtgtctcggaggcactggttaacaa 152  Q
    ||||||||||  |||||| ||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 24103087 - 24103187
Alignment:
Q  55 gtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 154  Q
    ||||||| |||||||  |||||||| ||||||| || | | |||||||||| || |||||||||  ||||||||||||||||| ||| | |||||| |||    
T  24103087 gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgcttaaagagtgtctcggaagcaatcgttaacgaga 24103186  T
Q  155 c 155  Q
    |    
T  24103187 c 24103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 39932721 - 39932813
Alignment:
Q  63 tgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||| || ||| ||||||||||||||| ||||  ||| |||  |||||||||||| |||||||||||| ||||||| | | |||||||||||    
T  39932721 tgcatggaaaattgaaatatttgacttttttatggaattattacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 36819755 - 36819793
Alignment:
Q  92 ttataaaataatttattcttttagaatctttaaagagtg 130  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36819755 ttataaaataattttttcttttagaatctttaaagagtg 36819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 10335020 - 10335159
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttag 115  Q
    ||||| ||||||||| |||| || |  ||||||| ||| |||| ||||||| || |||   ||||||||||||| || ||| |||||||||||||||| |    
T  10335020 ttaaggcctttaaattgtaattttttgtgaaaatttgtataattaatgcattgaaaattataatatttgactttttttatagaataatttattcttttgg 10335119  T
Q  116 aatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    |||  ||||||||||   || | ||||| |||||||||||    
T  10335120 aattcttaaagagtgctccgaatgcactcgttaacaagac 10335159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 17520995 - 17521074
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 90  Q
    ||||| ||||||||||||||||||||||| | || ||  |||||||||||||| ||| |  || |||||||||| |||||    
T  17520995 cactttttaagacctttaaatagtaactttttataaatgtatgtgtaatcaatacattggaaaacgaaatatttaacttt 17521074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 37564393 - 37564468
Alignment:
Q  80 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||||| ||| | |||||||| ||  ||||| || ||||||||||||| | |||||||| |||||||||||    
T  37564393 tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 2124141 - 2124203
Alignment:
Q  92 ttataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 154  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||   |||| ||||||||||    
T  2124141 ttatagaataatttcttcttttagaatgtttaaagaatgtctcgggaacactcgttaacaaga 2124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 5968377 - 5968437
Alignment:
Q  95 taaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||||||||||  || ||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  5968377 taaaataattgcttgttttagaatgtttaaagagtgccctggaggcactcgttaacaagac 5968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 22209488 - 22209376
Alignment:
Q  43 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 142  Q
    |||||||||| |||||||||||  | |  |||| |||||||| ||||| |||   |||||||  |||||||| |||  |||||||||||| ||||| |||    
T  22209488 atgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtgtcccggagacac 22209389  T
Q  143 tggttaacaagac 155  Q
    | ||||| |||||    
T  22209388 ttgttaataagac 22209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 16442188 - 16442075
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||||| ||||||||||   ||||||| |||||||||||||   | || |||| |||| ||||||||| ||||||| |||||||||||||||||    
T  16442188 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatattttgaaaatcaaaatgtttgacttttttataaactaatttattcttttaga 16442089  T
Q  117 atctttaaagagtg 130  Q
    ||||||||||||||    
T  16442088 atctttaaagagtg 16442075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 12383010 - 12383129
Alignment:
Q  11 cacttgttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 110  Q
    |||| |||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||  |||| |||||||| ||||| |||||||||||||| | ||    
T  12383010 cactagttaagtcctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctcct 12383109  T
Q  111 tttagaatctttaaagagtg 130  Q
    |||  |||  ||||||||||    
T  12383110 tttgaaattcttaaagagtg 12383129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 8176419 - 8176324
Alignment:
Q  32 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 127  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||| ||| | |||| ||||||||||||| |||||||    
T  8176419 agtaacttattatgaaaatatgtgtaattaatgcatcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaaga 8176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 12307904 - 12307821
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 129  Q
    |||||||||||||| |||| || || |||  |||||||||||||| |||||||||||||| |||||||  |||| |||||||||    
T  12307904 aaaatatgtgtaattaatgtattgaaaattaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 31702738 - 31702874
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||| | |||||||||||||| | || ||||||||||||||||||||||    |||  ||||| || ||||| |||||||||||||| |||||||  |    
T  31702738 ttaagatccttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaa 31702837  T
Q  117 atctttaaagagtgtctcggaggcactggttaacaagac 155  Q
    ||  |||||||||| | ||||  |||| |||||||||||    
T  31702838 attcttaaagagtgccccgga--cactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 6048268 - 6048381
Alignment:
Q  17 ttaagacctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 116  Q
    |||||||||||| ||||||||||   ||||||| |||||||||||||   | |  |||  |||| ||| ||||| ||||||| |||||| ||||||||||    
T  6048268 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatatcttggaaattaaaatgtttcacttttttataaattaatttcttcttttaga 6048367  T
Q  117 atctttaaagagtg 130  Q
    || |||||||||||    
T  6048368 atttttaaagagtg 6048381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 7465558 - 7465451
Alignment:
Q  44 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 143  Q
    ||||||| | ||||||||||||||||  ||| ||||||||||||||| ||||  || ||||| |||||| |||||| ||||| |||| | ||| ||||||    
T  7465558 tgaaaatttatgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtg-cccgggggcact 7465460  T
Q  144 ggttaacaa 152  Q
     ||||||||    
T  7465459 cgttaacaa 7465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 22696000 - 22696071
Alignment:
Q  83 ttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 154  Q
    |||| ||| |||||||||||||| ||||||| ||||| ||||||||||  || |||||||| ||||||||||    
T  22696000 ttgatttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaaga 22696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 35241509 - 35241410
Alignment:
Q  28 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt-tattataaaataatttattcttttagaatctttaaag 126  Q
    |||| |||||||||||| ||||||||| |||||||||||||   |||| |||||||| | || | |||||||||||||| || ||||| |||| ||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttctttttttaaaatccttaaag 35241410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 22695509 - 22695549
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttga 86  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  22695509 aaaatatgtgtaatcaatgcatcgaaaattgaaatatttga 22695549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 26311889 - 26311807
Alignment:
Q  46 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgact-ttattataaaataatttattcttttagaatctttaaaga 127  Q
    |||||||||||||| |||| || || |||| |||||||| ||  || ||||||| ||||||||||||| |||||| |||||||    
T  26311889 aaaatatgtgtaattaatgtattgaaaatcaaaatatttaaccatttttataaattaatttattctttcagaatccttaaaga 26311807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 30509387 - 30509286
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    |||||||||||||| || ||||||||| ||||| ||| ||| | |||||||  || |||| | ||  |||||||||||  ||||| |||| |||||||||    
T  30509387 tgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacactcgttaacaag 30509288  T
Q  154 ac 155  Q
    ||    
T  30509287 ac 30509286  T

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Target: scaffold0246 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 18144 - 18245
Alignment:
Q  54 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 153  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  18144 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 18243  T
Q  154 ac 155  Q
    ||    
T  18244 ac 18245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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