View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_349 (Length: 220)
Name: NF8902A_low_349
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_349 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 36971102 - 36970899
Alignment:
| Q |
17 |
atgaacgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaac |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971102 |
atgaacgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaac |
36971003 |
T |
|
| Q |
117 |
agttgatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatga |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36971002 |
agttgatgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggacga |
36970903 |
T |
|
| Q |
217 |
tatc |
220 |
Q |
| |
|
|||| |
|
|
| T |
36970902 |
tatc |
36970899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 39786381 - 39786325
Alignment:
| Q |
161 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgat |
39786325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 56067978 - 56068049
Alignment:
| Q |
121 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaa |
192 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| | ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
56068049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University