View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_356 (Length: 218)
Name: NF8902A_low_356
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_356 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 37704659 - 37704458
Alignment:
| Q |
17 |
actttcgtgttaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704659 |
actttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
37704560 |
T |
|
| Q |
117 |
tgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704559 |
tgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctt |
37704460 |
T |
|
| Q |
217 |
tt |
218 |
Q |
| |
|
|| |
|
|
| T |
37704459 |
tt |
37704458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 37699181 - 37698977
Alignment:
| Q |
17 |
actttcgtgttaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattg |
115 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37699181 |
actttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattg |
37699082 |
T |
|
| Q |
116 |
ttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaac |
213 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |
|
|
| T |
37699081 |
ttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaa |
37698982 |
T |
|
| Q |
214 |
ctttt |
218 |
Q |
| |
|
||||| |
|
|
| T |
37698981 |
ctttt |
37698977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 37437715 - 37437531
Alignment:
| Q |
27 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
125 |
Q |
| |
|
||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
|
|
| T |
37437715 |
taattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattg |
37437616 |
T |
|
| Q |
126 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtca |
211 |
Q |
| |
|
|||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
37437615 |
tcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtca |
37437531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 37698697 - 37698640
Alignment:
| Q |
161 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttt |
37698640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 37698808 - 37698732
Alignment:
| Q |
26 |
ttaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggtta |
101 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
37698808 |
ttaattacgttaaaaaagtcttggtcttccaagatgttatttagtttaacgaacaccaaacttttgtatgattgtta |
37698732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 16841041 - 16841109
Alignment:
| Q |
27 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
94 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841041 |
taattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University