View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_365 (Length: 210)

Name: NF8902A_low_365
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_365
NF8902A_low_365
[»] chr6 (9 HSPs)
chr6 (20-194)||(28097221-28097395)
chr6 (32-147)||(29827263-29827378)
chr6 (119-185)||(28186633-28186699)
chr6 (122-185)||(28326717-28326780)
chr6 (122-185)||(28504353-28504416)
chr6 (35-165)||(27697379-27697509)
chr6 (119-185)||(28296617-28296683)
chr6 (119-185)||(28515390-28515456)
chr6 (35-147)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (35-194)||(3280889-3281048)
[»] chr5 (1 HSPs)
chr5 (32-185)||(16692106-16692259)
[»] scaffold0019 (1 HSPs)
scaffold0019 (31-183)||(57083-57235)
[»] chr8 (1 HSPs)
chr8 (31-156)||(31906322-31906447)
[»] chr4 (1 HSPs)
chr4 (64-185)||(5089772-5089893)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 28097221 - 28097395
Alignment:
Q  20 aaaacactcccctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097221 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 28097320  T
Q  120 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagtataat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28097321 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataat 28097395  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 29827378 - 29827263
Alignment:
Q  32 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 131  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  132 tatgctttccatacaa 147  Q
    ||| ||||||| ||||    
T  29827278 tattctttccaaacaa 29827263  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 28186699 - 28186633
Alignment:
Q  119 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28186633  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 28326780 - 28326717
Alignment:
Q  122 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28326717  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 28504416 - 28504353
Alignment:
Q  122 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28504353  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  35 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 134  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  135 gctttccatacaagttggaacctaatatttc 165  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 28296617 - 28296683
Alignment:
Q  119 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28296683  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 28515456 - 28515390
Alignment:
Q  119 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28515390  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 29842785 - 29842897
Alignment:
Q  35 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 134  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  135 gctttccatacaa 147  Q
     ||||||| ||||    
T  29842885 tctttccaaacaa 29842897  T

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Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 3281048 - 3280889
Alignment:
Q  35 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 134  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  135 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagtataat 194  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| || |||||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataat 3280889  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 16692259 - 16692106
Alignment:
Q  32 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 131  Q
    |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |||||||||||||    
T  16692259 tcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatttccattcttcta 16692160  T
Q  132 tatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 185  Q
    ||| ||||||| ||||||| || |||| || ||| || || |||||||||||||    
T  16692159 tattctttccaaacaagttagatcctactacttctaaagctaatggaaggccag 16692106  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 57083 - 57235
Alignment:
Q  31 ctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttct 130  Q
    |||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| ||||||||| ||    
T  57083 ctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatttccattctcct 57182  T
Q  131 atatgctttccatacaagttggaacctaatatttccaaggccaatggaaggcc 183  Q
    |||| ||||||| ||||||| ||||| | || ||| |||||||||||||||||    
T  57183 atattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 31906447 - 31906322
Alignment:
Q  31 ctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttct 130  Q
    ||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| | |||||||| |    
T  31906447 ctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagattcccattcttgt 31906348  T
Q  131 atatgctttccatacaagttggaacc 156  Q
    |||| ||||||| | || ||||||||    
T  31906347 atattctttccaaataaattggaacc 31906322  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 5089772 - 5089893
Alignment:
Q  64 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 163  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  164 tccaaggccaatggaaggccag 185  Q
    || || ||||||||||||||||    
T  5089872 tctaaagccaatggaaggccag 5089893  T

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