View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_367 (Length: 210)
Name: NF8902A_low_367
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_367 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 34575879 - 34575708
Alignment:
| Q |
18 |
gaacaatgaatatatatatgttactgaatgtcaaaacttctctattttcccaataacatgtgtgctctttgaacatctgttag-attttctatggggatg |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
34575879 |
gaacaatgaatat--atatgttactgaatgtcaaaacttctctatttt-ccattaacatgtgtgctcttagaacatctgttagtattttctatggggatg |
34575783 |
T |
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| Q |
117 |
cgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaagaact |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34575782 |
cgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaaaaact |
34575708 |
T |
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Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 34576666 - 34576495
Alignment:
| Q |
18 |
gaacaatgaatatatatatgttactgaatgtcaaaacttctctattttcccaataacatgtgtgctctttgaacatctgttag-attttctatggggatg |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
34576666 |
gaacaatgaatat--atatgttactgaatgtcaaaacttctctatttt-cgattaacatgtgtgctcttagaacatctgttagtattttctatggggatg |
34576570 |
T |
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| Q |
117 |
cgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaagaact |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34576569 |
cgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaaaaact |
34576495 |
T |
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