View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_374 (Length: 207)
Name: NF8902A_low_374
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_374 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 27731955 - 27732142
Alignment:
| Q |
1 |
tcagccacaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctg |
100 |
Q |
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| T |
27731955 |
tcagccgcaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccacattgcttgaaactttgaactttttatgtacctg |
27732054 |
T |
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| Q |
101 |
accatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaagatgttcatgatcgatgatattt |
188 |
Q |
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| T |
27732055 |
accatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatattt |
27732142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 21155455 - 21155590
Alignment:
| Q |
50 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt |
149 |
Q |
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| T |
21155455 |
gatcttgtcattatccacattgcttgaagctttgagcttttcatgtagatgaccatgat---caccaccacgagcagcagcacaagagatatggaagagt |
21155551 |
T |
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| Q |
150 |
gtttgtgctccattaagatgttcatgatcgatgatattt |
188 |
Q |
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| T |
21155552 |
gtatgtgctccattaatttgttcatgatcaatgatattt |
21155590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 3073644 - 3073778
Alignment:
| Q |
50 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt |
149 |
Q |
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|||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||| |||||| || | | ||||||||||| ||||||| |
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| T |
3073644 |
gatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgaccatgatcagcaccacgaca----gttgtgcaagacatatcgaagagt |
3073739 |
T |
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| Q |
150 |
gtttgtgctccattaagatgttcatgatcgatgatattt |
188 |
Q |
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| T |
3073740 |
gtatatgctccattaagatgttcatgatcaatgatattt |
3073778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 21249519 - 21249473
Alignment:
| Q |
50 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgta |
96 |
Q |
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| T |
21249519 |
gatcttttcattatccacattgcttgaagctttgagctttttatgta |
21249473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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