View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_379 (Length: 205)

Name: NF8902A_low_379
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_379
NF8902A_low_379
[»] chr3 (3 HSPs)
chr3 (90-205)||(26452896-26453011)
chr3 (65-147)||(26452805-26452887)
chr3 (69-142)||(32609383-32609456)
[»] scaffold0110 (2 HSPs)
scaffold0110 (69-168)||(11425-11524)
scaffold0110 (69-168)||(19162-19261)
[»] chr8 (5 HSPs)
chr8 (69-168)||(25939281-25939380)
chr8 (61-100)||(34676985-34677024)
chr8 (111-159)||(9040955-9041003)
chr8 (61-101)||(28798979-28799019)
chr8 (68-168)||(33432049-33432151)
[»] chr5 (17 HSPs)
chr5 (61-168)||(14613533-14613640)
chr5 (68-152)||(6706273-6706357)
chr5 (111-163)||(10818875-10818927)
chr5 (109-168)||(10818787-10818845)
chr5 (69-168)||(35924645-35924743)
chr5 (104-149)||(4639521-4639566)
chr5 (64-100)||(14123047-14123083)
chr5 (61-124)||(5506879-5506942)
chr5 (85-168)||(28976687-28976770)
chr5 (66-100)||(30511846-30511880)
chr5 (66-100)||(30552186-30552220)
chr5 (112-165)||(4192001-4192054)
chr5 (69-106)||(30513855-30513892)
chr5 (69-106)||(30554195-30554232)
chr5 (111-163)||(8367019-8367071)
chr5 (64-100)||(12075931-12075967)
chr5 (112-152)||(35924595-35924635)
[»] chr4 (12 HSPs)
chr4 (66-168)||(21538912-21539014)
chr4 (69-168)||(4873037-4873136)
chr4 (85-152)||(5979786-5979853)
chr4 (76-152)||(3703584-3703660)
chr4 (69-152)||(25812263-25812339)
chr4 (111-153)||(12329026-12329068)
chr4 (112-158)||(21538844-21538890)
chr4 (126-163)||(2605367-2605404)
chr4 (88-133)||(48292387-48292432)
chr4 (112-153)||(53860895-53860936)
chr4 (72-100)||(24680790-24680818)
chr4 (61-109)||(32430543-32430591)
[»] chr7 (7 HSPs)
chr7 (67-147)||(27866672-27866752)
chr7 (69-152)||(48073016-48073099)
chr7 (56-100)||(5617900-5617944)
chr7 (68-100)||(21311760-21311792)
chr7 (119-163)||(36390712-36390756)
chr7 (90-142)||(27747373-27747425)
chr7 (115-147)||(39933632-39933664)
[»] chr1 (8 HSPs)
chr1 (61-168)||(30018564-30018670)
chr1 (69-169)||(49632894-49632995)
chr1 (112-146)||(11985458-11985492)
chr1 (65-168)||(39065299-39065401)
chr1 (111-163)||(30018687-30018740)
chr1 (69-152)||(8258910-8258991)
chr1 (88-168)||(36724171-36724251)
chr1 (64-100)||(42486436-42486472)
[»] chr6 (11 HSPs)
chr6 (69-146)||(30351451-30351528)
chr6 (74-168)||(3806174-3806267)
chr6 (112-159)||(13613749-13613796)
chr6 (85-152)||(16396652-16396719)
chr6 (69-108)||(26221247-26221286)
chr6 (69-133)||(18142429-18142493)
chr6 (69-115)||(12120174-12120220)
chr6 (67-109)||(16185328-16185370)
chr6 (61-101)||(13613814-13613854)
chr6 (69-133)||(22997001-22997065)
chr6 (69-133)||(23791336-23791400)
[»] chr2 (6 HSPs)
chr2 (69-165)||(37629609-37629704)
chr2 (81-163)||(13793669-13793751)
chr2 (111-159)||(37096596-37096644)
chr2 (77-147)||(39994519-39994590)
chr2 (61-101)||(4984009-4984049)
chr2 (69-109)||(13798841-13798881)
[»] scaffold0197 (1 HSPs)
scaffold0197 (68-100)||(26024-26056)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 26452896 - 26453011
Alignment:
Q  90 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgg 189  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgg 26452995  T
Q  190 gctttgtgtgctgttg 205  Q
    ||||||||||||||||    
T  26452996 gctttgtgtgctgttg 26453011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 26452887 - 26452805
Alignment:
Q  65 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452887 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 32609456 - 32609383
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 142  Q
    ||||||||||||||| |||||||| |||| |||  |||  ||||||||| | |||| |||||||||||||||||    
T  32609456 ttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctagaaaa 32609383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 11524 - 11425
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    ||||||||||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11524 ttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 19261 - 19162
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    ||||||||||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19261 ttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 25939380 - 25939281
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    |||| |||||||||||||||||||||||||||  ||| | |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939380 ttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 34677024 - 34676985
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaacta 100  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  34677024 accgccgattttctagttataagccaacggtagttaacta 34676985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  111 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 159  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 28798979 - 28799019
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactat 101  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  28798979 accgccggttttctagttataagtcagcggtagttaactat 28799019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 33432151 - 33432049
Alignment:
Q  68 attttctagttataagccagcggtagttaactattgctggggtgtttttggt---cattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaat 164  Q
    ||||||||||||||||  || || |||||| || ||||| |||||||||  |   ||||||||||| |||||||||||||||  |||| |||||| ||||    
T  33432151 attttctagttataagtaagtggcagttaattactgctgaggtgtttttttttatcattttcatgtatttctagaaaacaatagatgt-caaaaaacaat 33432053  T
Q  165 tctc 168  Q
    ||||    
T  33432052 tctc 33432049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 14613640 - 14613533
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaag 160  Q
    |||||||||||||||||||||||||||| || | ||||||  | ||| ||||||||||| |||||||||||||||||| |||||||| |||    |||||    
T  14613640 accgccgattttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaag 14613541  T
Q  161 caattctc 168  Q
    ||||||||    
T  14613540 caattctc 14613533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 6706357 - 6706273
Alignment:
Q  68 attttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    ||||| |||||||||| || |||||||||||||  ||||   |||||||||| |||||||||||||| ||  |||||||||||||    
T  6706357 attttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgt 6706273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  111 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 163  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  109 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 35924645 - 35924743
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    ||||||||||||||| ||  ||||||||||||| ||| || ||| |||||| |||| ||| ||||||||| |||||||| ||||   |||||||||||||    
T  35924645 ttttctagttataagtcaatggtagttaactatcgct-ggatgtgtttggttatttccatatgtttctaggaaacaatggatgtgagaaaagcaattctc 35924743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  104 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 149  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 14123083 - 14123047
Alignment:
Q  64 gccgattttctagttataagccagcggtagttaacta 100  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14123083 gccggttttctagttataagccagcggtagttaacta 14123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 5506942 - 5506879
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattt 124  Q
    |||||||||||||||||||||||||||  | |||||||||  |||| | |||||||||| ||||    
T  5506942 accgccgattttctagttataagccagtcgcagttaactaccgctgagatgtttttggttattt 5506879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 28976687 - 28976770
Alignment:
Q  85 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    ||||||||||||||||| | | |  |||||||| |||||||||||| ||||||  |||||||| ||||   |||||||||||||    
T  28976687 cagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaattctc 28976770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 30511846 - 30511880
Alignment:
Q  66 cgattttctagttataagccagcggtagttaacta 100  Q
    ||||||||||||||||||||||| |||||||||||    
T  30511846 cgattttctagttataagccagcagtagttaacta 30511880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 30552186 - 30552220
Alignment:
Q  66 cgattttctagttataagccagcggtagttaacta 100  Q
    ||||||||||||||||||||||| |||||||||||    
T  30552186 cgattttctagttataagccagcagtagttaacta 30552220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  112 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 165  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 30513892 - 30513855
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctg 106  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30513892 ttttctagttataagtcagcggtagttaactactgctg 30513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 30554232 - 30554195
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctg 106  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30554232 ttttctagttataagtcagcggtagttaactactgctg 30554195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  111 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 163  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 12075967 - 12075931
Alignment:
Q  64 gccgattttctagttataagccagcggtagttaacta 100  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  12075967 gccggttttctagttataagtcagcggtagttaacta 12075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  112 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 21538912 - 21539014
Alignment:
Q  66 cgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 165  Q
    |||||||||| |||||||||||||||| |||||||    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  |||||||||||    
T  21538912 cgattttctaattataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaatt 21539011  T
Q  166 ctc 168  Q
    |||    
T  21539012 ctc 21539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 4873136 - 4873037
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    ||||||||||||||| ||||||||||||||||  ||||  ||||||||| |||||| ||||||||| ||||||| |||| | ||| |||||| |||||||    
T  4873136 ttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaaagaaattctc 4873037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 5979786 - 5979853
Alignment:
Q  85 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979786 cagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 3703660 - 3703584
Alignment:
Q  76 gttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    |||||||| || |||||||||||||  ||||  |  |||||||||||||||||||||||||| ||||||||| ||||    
T  3703660 gttataagtcaacggtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 25812339 - 25812263
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    |||||||||||||| |||||||||||||||||         |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812339 ttttctagttataaaccagcggtagttaactaca-------tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  111 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 153  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  112 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 158  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  126 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 163  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 48292387 - 48292432
Alignment:
Q  88 cggtagttaactattgctggggtgtttttggtcattttcatgtgtt 133  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||    
T  48292387 cggtagttaactaccgctggagtgtttttggtcatttacatgtgtt 48292432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  112 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 153  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 24680818 - 24680790
Alignment:
Q  72 tctagttataagccagcggtagttaacta 100  Q
    |||||||||||||||||||||||||||||    
T  24680818 tctagttataagccagcggtagttaacta 24680790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 32430591 - 32430543
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactattgctgggg 109  Q
    ||||||||||||||||||||||| | | ||||||||||||  |||||||    
T  32430591 accgccgattttctagttataagtctgtggtagttaactaccgctgggg 32430543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 27866672 - 27866752
Alignment:
Q  67 gattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 147  Q
    ||||||||||||||||| ||||||||||||||||| | | || |||||| |||||||||||| ||||||||| ||||||||    
T  27866672 gattttctagttataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatg 27866752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 48073099 - 48073016
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    |||||||||||||||||||   ||||||||||| ||| | || ||||||||||||| ||||||||||||  |||||| ||||||    
T  48073099 ttttctagttataagccagtaatagttaactatcgctagagtatttttggtcatttccatgtgtttctaataaacaaagaatgt 48073016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 5617944 - 5617900
Alignment:
Q  56 taatgaccgccgattttctagttataagccagcggtagttaacta 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||    
T  5617944 taattaccgccggttttctagttataagccagcggtagttaacta 5617900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 21311792 - 21311760
Alignment:
Q  68 attttctagttataagccagcggtagttaacta 100  Q
    |||||||||||||||||||||||||||||||||    
T  21311792 attttctagttataagccagcggtagttaacta 21311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  119 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 163  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 27747425 - 27747373
Alignment:
Q  90 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 142  Q
    |||||||||||  |||| | | ||||| |||||||||||||||||||||||||    
T  27747425 gtagttaactaccgctgagttatttttagtcattttcatgtgtttctagaaaa 27747373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  115 ttggtcattttcatgtgtttctagaaaacaatg 147  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 30018670 - 30018564
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaag 160  Q
    ||||||||||||||||||||||||  ||| ||||||||||  ||| | ||||||||| ||||||||||| | |||||| ||||||||  ||| |||||||    
T  30018670 accgccgattttctagttataagcacgcgatagttaactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaacaatggttgt-caaaaag 30018572  T
Q  161 caattctc 168  Q
    ||||||||    
T  30018571 caattctc 30018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 49632894 - 49632995
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattct 167  Q
    ||||||||||||||  ||||||||||||||||   |  || ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||    
T  49632894 ttttctagttataaatcagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattct 49632993  T
Q  168 cg 169  Q
    ||    
T  49632994 cg 49632995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  112 tttttggtcattttcatgtgtttctagaaaacaat 146  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 39065401 - 39065299
Alignment:
Q  65 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaat 164  Q
    |||||||| |||||||||| ||||| |||||||||||  |||  ||||||||  |||||| ||| |||||||||  ||||||| ||||| | |||| |||    
T  39065401 ccgattttttagttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttctagggaacaatggatgtcaacaaagtaat 39065303  T
Q  165 tctc 168  Q
    ||||    
T  39065302 tctc 39065299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  111 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 163  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 8258991 - 8258910
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    |||||||||||||||||| |  ||||||||||  |||| |   ||||| ||||||||||||||||| ||| |||||||| ||||    
T  8258991 ttttctagttataagccaacaatagttaactaccgctgag--ttttttagtcattttcatgtgtttttaggaaacaatggatgt 8258910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 36724251 - 36724171
Alignment:
Q  88 cggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    |||||||||||||   ||||| ||||||||||||||| |||  | |||||||||||||  |||||  |||||| |||||||    
T  36724251 cggtagttaactaccactgggatgtttttggtcatttccatacgcttctagaaaacaacaaatgtaaaaaaaggaattctc 36724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 42486472 - 42486436
Alignment:
Q  64 gccgattttctagttataagccagcggtagttaacta 100  Q
    |||| |||||||||||||||||||| |||||||||||    
T  42486472 gccggttttctagttataagccagcagtagttaacta 42486436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 30351528 - 30351451
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaat 146  Q
    |||||||||||||||  ||  |||||||||||  | |||||||||||||||||||||||| ||||||||| |||||||    
T  30351528 ttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 3806267 - 3806174
Alignment:
Q  74 tagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 168  Q
    |||||||||| |||| |||||| | ||||| |||| ||||||||||| |||| ||||||||||||||||| ||| ||||   |||||||||||||    
T  3806267 tagttataagtcagctgtagttgattattgttgggatgtttttggtc-tttttatgtgtttctagaaaacgatggatgtgacaaaagcaattctc 3806174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  112 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 159  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 16396652 - 16396719
Alignment:
Q  85 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 152  Q
    ||||||||||||||||  | |||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  16396652 cagcggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgt 16396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 26221286 - 26221247
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggg 108  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26221286 ttttctagttataagccagcggttgttaactattgctggg 26221247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 18142429 - 18142493
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 133  Q
    ||||||||| |||| | |||| ||||||||||  |||| ||||||||| ||||||||||||||||    
T  18142429 ttttctagtcataaacaagcgctagttaactaccgctgaggtgtttttagtcattttcatgtgtt 18142493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 12120174 - 12120220
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttt 115  Q
    |||||||||||||||| |||||||||||||||  |||||||| ||||    
T  12120174 ttttctagttataagctagcggtagttaactaccgctggggtatttt 12120220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 16185328 - 16185370
Alignment:
Q  67 gattttctagttataagccagcggtagttaactattgctgggg 109  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  16185328 gattttctagttataagccaacggtagttaactaccgctgggg 16185370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 13613814 - 13613854
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactat 101  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  13613814 accgtcgattttctagttagaagccagtggtagttaactat 13613854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 22997001 - 22997065
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 133  Q
    |||||||||||||| | ||  |||||||||||  ||||  || ||||||||||||||||||||||    
T  22997001 ttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgtt 22997065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 23791400 - 23791336
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 133  Q
    |||||||||||||| | ||  |||||||||||  ||||  || ||||||||||||||||||||||    
T  23791400 ttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgtt 23791336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 37629609 - 37629704
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 165  Q
    ||||||||||||||| ||||||||||||||||| | | |  ||||||||||||||| ||||||||| ||  || |||| |||||  |||||||||||    
T  37629609 ttttctagttataagtcagcggtagttaactatcgat-gaatgtttttggtcatttccatgtgtttttaagaagcaataaatgtgaaaaaagcaatt 37629704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 13793751 - 13793669
Alignment:
Q  81 aagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 163  Q
    |||||| | |||||||||||  | ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793751 aagccaaccgtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  111 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 159  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 39994519 - 39994590
Alignment:
Q  77 ttataagccagcggtagttaactattgctggggtgtttttgg-tcattttcatgtgtttctagaaaacaatg 147  Q
    ||||||| || |||||||||||| ||| |||  | ||||||| |||||| ||||||||||||||||||||||    
T  39994519 ttataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatg 39994590  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 4984009 - 4984049
Alignment:
Q  61 accgccgattttctagttataagccagcggtagttaactat 101  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  4984009 accgtcgattttctagttataagttagcggtagttaactat 4984049  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 13798881 - 13798841
Alignment:
Q  69 ttttctagttataagccagcggtagttaactattgctgggg 109  Q
    ||||| ||||||||| |||||||||||||||| ||||||||    
T  13798881 ttttcgagttataagtcagcggtagttaactactgctgggg 13798841  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 26056 - 26024
Alignment:
Q  68 attttctagttataagccagcggtagttaacta 100  Q
    |||||||||||||||| ||||||||||||||||    
T  26056 attttctagttataagtcagcggtagttaacta 26024  T

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