View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_383 (Length: 204)
Name: NF8902A_low_383
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_383 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 48236567 - 48236737
Alignment:
| Q |
21 |
ctttaaacacaggtccatatccaccttcacctagtttctttgatggtgagaatctctcggtagcaacttcaatctccatcatagtgtattttctatatcg |
120 |
Q |
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| T |
48236567 |
ctttaaacacaggtccgtatccaccttcacctagtttctttgatggtgagaatctctcggtagcaacttcaatctccatcatagtgtattttctatatcg |
48236666 |
T |
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| Q |
121 |
attatcattttgagccaatgcattcaatactttattcctctcttctgcctctttcctagccttcatctctg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236667 |
attatcattttgagccaatgcattcaatactttattcctctcttctgcctctttcctagccttcatctctg |
48236737 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 3685907 - 3685864
Alignment:
| Q |
21 |
ctttaaacacaggtccatatccaccttcacctagtttctttgat |
64 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
3685907 |
ctttaaacacaggtccatatccaccttcacctattttcattgat |
3685864 |
T |
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