View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_39 (Length: 417)
Name: NF8902A_low_39
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 183 - 411
Target Start/End: Complemental strand, 34663309 - 34663076
Alignment:
| Q |
183 |
ttgatagcaagactctttaaaaatttgataaatgatacttatcaaattttagggatgaaaaataaaataatattttataaagactaaaacgatatttaaa |
282 |
Q |
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| T |
34663309 |
ttgatagcaagactctttaaaaatttgataaatgatacttatcaaattttagggatgaaaaataaaataatattttataaagactaaaacgatatttaaa |
34663210 |
T |
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| Q |
283 |
cgtttacctcactaaagccaattagtgtgaattgaagcca--ctctgtactgannnnnnnattgcaac---tgttattaatataatcattatgtcatagt |
377 |
Q |
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| T |
34663209 |
cgtttacctcactaaagccaattagtgtgaattgaagccactctctgtactgatttttttattgcaactgttgttattaatataatcattatgtcatagt |
34663110 |
T |
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| Q |
378 |
atctatatataggtaagttcaaaaatgcaaatgg |
411 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34663109 |
atctatatataggtaagttcaaaaatgcaaatgg |
34663076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 34663378 - 34663306
Alignment:
| Q |
6 |
tttggtgtttaacagaacagctacttgtacgatgttatctgtctgcatcagttgcttcttagattatgattga |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34663378 |
tttggtgtttaacagaacagctacttgtacgatgttatctgtctgcatcagttgcttcttagattatgattga |
34663306 |
T |
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