View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_4 (Length: 595)
Name: NF8902A_low_4
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 193 - 591
Target Start/End: Complemental strand, 26691175 - 26690777
Alignment:
| Q |
193 |
tcaaaaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaa |
292 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26691175 |
tcaagaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaa |
26691076 |
T |
|
| Q |
293 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
26691075 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagtgcaaccattgtcaaagtct |
26690976 |
T |
|
| Q |
393 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcaccca |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690975 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcaccca |
26690876 |
T |
|
| Q |
493 |
tgttaccaaactctcattatgagtcttttctccatctgtgattaagatacttatcattgcactcttcccggtaatcatctctagcagcacaactccata |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26690875 |
tgttaccaaactctcattatgagtcttttctccatctgtgattaagatacttatcattgcactcttcccagtaatcatctctagcagcacaactccata |
26690777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 193 - 591
Target Start/End: Complemental strand, 26732486 - 26732088
Alignment:
| Q |
193 |
tcaaaaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaa |
292 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26732486 |
tcaagaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaa |
26732387 |
T |
|
| Q |
293 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
26732386 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtct |
26732287 |
T |
|
| Q |
393 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcaccca |
492 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26732286 |
ccgatttaaccatgtcataatttgatcccaatgtagggtctactatttgttcaaccaaagatttcatttctaataatttccttcttttctctctcaccca |
26732187 |
T |
|
| Q |
493 |
tgttaccaaactctcattatgagtcttttctccatctgtgattaagatacttatcattgcactcttcccggtaatcatctctagcagcacaactccata |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26732186 |
tgttaccaaactctcattatgagtcttttctccatctgtgattaagatacttgtcattgcactcttcccggtaatcatctctagcagcacaactccata |
26732088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 205 - 591
Target Start/End: Complemental strand, 26695324 - 26694938
Alignment:
| Q |
205 |
tccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatga |
304 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
26695324 |
tccatgactttgaattgaattaaggaagataaacatgaaaactaataaccatcaaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatga |
26695225 |
T |
|
| Q |
305 |
gtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaacca |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
26695224 |
gtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccaatttaacca |
26695125 |
T |
|
| Q |
405 |
tgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctctcacccatgttaccaaact |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26695124 |
tgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctgataaattccttcttttctctctcacccatgttaccaaact |
26695025 |
T |
|
| Q |
505 |
ctcattatgagtcttttctccatctgtgattaagatacttatcattgcactcttcccggtaatcatctctagcagcacaactccata |
591 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26695024 |
ctcattatgagtcttttctccgtctgtgattaagatacccgtcattgcactcttcccggtaatcatctctagcagcacaactccata |
26694938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 26732734 - 26732554
Alignment:
| Q |
21 |
tatttgagtaattttctagttcttggtctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccatctttactgttacat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26732734 |
tatttgagtaattttctagttcttggtctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccatctttactgttacat |
26732635 |
T |
|
| Q |
121 |
ttactcaactattttttggttgcaaactaaactacaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26732634 |
ttactcaactattttttggttgcaaactaaactgcaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
26732554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 286 - 513
Target Start/End: Original strand, 26674996 - 26675223
Alignment:
| Q |
286 |
tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtg |
385 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | |||||||||| ||||||| | ||||| | |||||||||| ||| ||||| | |||||| |||| || |
|
|
| T |
26674996 |
tcaagaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc |
26675095 |
T |
|
| Q |
386 |
aaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctc |
485 |
Q |
| |
|
|| |||| ||||| ||| |||||||||||| ||||||||| |||||| ||||||||||| | | || || || |||| || |||||||||||||||| |
|
|
| T |
26675096 |
aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctctt |
26675195 |
T |
|
| Q |
486 |
tcacccatgttaccaaactctcattatg |
513 |
Q |
| |
|
| | ||||||||| || ||||||||||| |
|
|
| T |
26675196 |
taatccatgttactaacctctcattatg |
26675223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 26691317 - 26691243
Alignment:
| Q |
122 |
tactcaactattttttggttgcaaactaaactacaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26691317 |
tactcaactattttttggttgcaaacta-----caaaagaaaatgacctatataaatagagcagtatgacttaaaaaatt |
26691243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 26696758 - 26696699
Alignment:
| Q |
47 |
tctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccat |
106 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
26696758 |
tctttactgatccatgacttggcttggtcaacaagtctttaatatttgtaggaattccat |
26696699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University