View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_40 (Length: 416)
Name: NF8902A_low_40
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 36603201 - 36603600
Alignment:
| Q |
7 |
caatcaatacttatttcctctaatcctaaacaaaggtacaaaaccacacccatgaaagcaagaccagcatccaatgcaccagacaacacataattatgac |
106 |
Q |
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| T |
36603201 |
caatcaatacttatttcctctaatcctaaacaaaggtacaaaaccacacccatgaaagcaagaccagcatccaatgcaccagacaacacataattatgac |
36603300 |
T |
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| Q |
107 |
gctgccaccaatctggtttatacctatacacaacaaacccagacaaaaaaccaacaatgatccagctagtgtaattcactgctgtagctggtggcatcat |
206 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603301 |
gctgccaccattctggcttatacctatacacaacaaaaccagacaaaaaaccaacaatgatccagctagtgtaattcactgctgtagctggtggcatcat |
36603400 |
T |
|
| Q |
207 |
tccagtagcacctatcaacacaggcatgttgatgagtttaatccattcttgttgtggaaaggctcttgtagctaaccaaactaacaaaggagcaatggct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603401 |
tccagtagcacctatcaacacaggcatgttgatgagtttaatccattcttgttgtggaaaggctcttgtagctaaccaaactaacaaaggagcaatggct |
36603500 |
T |
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| Q |
307 |
ccacctaggaagaaccaattgatattctcgtaggttcctaagtttccgaagattcttcttggaccaattaagccccaaataactgatgcatcgtagaata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603501 |
ccacctaggaagaaccaattgatattctcgtaggttcctaagtttccgaagattcttcttggaccaattaagccccaaataactgatgcatcgtagaata |
36603600 |
T |
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