View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_43 (Length: 411)

Name: NF8902A_low_43
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_43
NF8902A_low_43
[»] chr3 (3 HSPs)
chr3 (17-411)||(42429792-42430186)
chr3 (228-303)||(42430700-42430774)
chr3 (225-278)||(54694926-54694979)
[»] chr2 (2 HSPs)
chr2 (235-308)||(11928359-11928432)
chr2 (229-277)||(29156152-29156200)
[»] chr1 (2 HSPs)
chr1 (228-278)||(19991050-19991100)
chr1 (242-278)||(28313853-28313889)
[»] chr5 (2 HSPs)
chr5 (226-273)||(33767346-33767393)
chr5 (225-273)||(10555375-10555423)
[»] chr7 (1 HSPs)
chr7 (225-273)||(20009092-20009140)
[»] chr4 (1 HSPs)
chr4 (228-284)||(34553020-34553076)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 42429792 - 42430186
Alignment:
Q  17 acatcataggatctagtagaactattgaatctaattacttagtcatggttcaccatgagccactttgtaggcagttcaccttagacataagcaaaattga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42429792 acatcataggatctagtagaactattgaatctaattacttagtcatggttcaccatgagccactttgtaggcagttcaccttagacataagcaaaattga 42429891  T
Q  117 atattgaaatatttcatcaaagcaactccttatcatacaacaaagaatgttcgatatctccttaaagagagatgagaatttttgaacaaaacatttatag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42429892 atattgaaatatttcatcaaagcaactccttatcatacaacaaagaatgttcgatatctccttaaagagagatgagaatttttgaacaaaacatttatag 42429991  T
Q  217 cagttctgtataggaggcatatatggactccaagagtaatttaaaagagttactccaaatctctaccagtgattttgttttaatccaatggctcaatatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42429992 cagttctgtataggaggcatatatggactccaagagtaatttaaaagagttactccaaatctctaccagtgattttgttttaatccaatggctcaatatt 42430091  T
Q  317 aattttaatcaaaatcacgatacacactttcttaggtcctcttcctaattctaccattctattgacggcagcctctttgacgtgttctaaactga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42430092 aattttaatcaaaatcacgatacacactttcttaggtcctcttcctaattctaccattctattgacggcagcctctttgacgtgttctaaactga 42430186  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 42430774 - 42430700
Alignment:
Q  228 aggaggcatatatggactccaagagtaatttaaaagagttactccaaatctctaccagtgattttgttttaatcca 303  Q
    |||||| |||||| |||||||||||||| |||| | |||||||||||| ||| |||| ||||||||||||||||||    
T  42430774 aggagggatatattgactccaagagtaacttaaga-agttactccaaacctccaccattgattttgttttaatcca 42430700  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 54694926 - 54694979
Alignment:
Q  225 tataggaggcatatatggactccaagagtaatttaaaagagttactccaaatct 278  Q
    ||||||||| |||| | |||||||||||||| | ||||||||||||||||||||    
T  54694926 tataggagggatattttgactccaagagtaactcaaaagagttactccaaatct 54694979  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 11928432 - 11928359
Alignment:
Q  235 atatatggactccaagagtaatttaaaagagttactccaaatctctaccagtgattttgttttaatccaatggc 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||| | || |||||||| || ||||||    
T  11928432 atatattgactccaagagtaatttaaaagagttactccaaatctacaccattaatattgttttactctaatggc 11928359  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 29156152 - 29156200
Alignment:
Q  229 ggaggcatatatggactccaagagtaatttaaaagagttactccaaatc 277  Q
    ||||| |||| | |||||||||||||| | |||||||||||||||||||    
T  29156152 ggagggatattttgactccaagagtaactcaaaagagttactccaaatc 29156200  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 19991100 - 19991050
Alignment:
Q  228 aggaggcatatatggactccaagagtaatttaaaagagttactccaaatct 278  Q
    |||||| |||||| |||||||||||||| | ||||||||||||||||||||    
T  19991100 aggagggatatattgactccaagagtaactcaaaagagttactccaaatct 19991050  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 28313853 - 28313889
Alignment:
Q  242 gactccaagagtaatttaaaagagttactccaaatct 278  Q
    |||||||||||||| | ||||||||||||||||||||    
T  28313853 gactccaagagtaactcaaaagagttactccaaatct 28313889  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 33767393 - 33767346
Alignment:
Q  226 ataggaggcatatatggactccaagagtaatttaaaagagttactcca 273  Q
    |||||||| |||||| |||||||||||||| || ||||||||||||||    
T  33767393 ataggagggatatattgactccaagagtaagtttaaagagttactcca 33767346  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 10555375 - 10555423
Alignment:
Q  225 tataggaggcatatatggactccaagagtaatttaaaagagttactcca 273  Q
    ||||||||| |||||| |||||||||||||| |  ||||||||||||||    
T  10555375 tataggagggatatattgactccaagagtaagtctaaagagttactcca 10555423  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 20009140 - 20009092
Alignment:
Q  225 tataggaggcatatatggactccaagagtaatttaaaagagttactcca 273  Q
    ||||||||| |||||| |||||||||||||| |  ||||||||||||||    
T  20009140 tataggagggatatattgactccaagagtaagtctaaagagttactcca 20009092  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 34553020 - 34553076
Alignment:
Q  228 aggaggcatatatggactccaagagtaatttaaaagagttactccaaatctctacca 284  Q
    |||||| |||||| |||||||||||||| | ||  ||||||||||||||| ||||||    
T  34553020 aggagggatatattgactccaagagtaactcaatggagttactccaaatcactacca 34553076  T

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