View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_46 (Length: 401)
Name: NF8902A_low_46
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 49391769 - 49391422
Alignment:
| Q |
18 |
atcattattttaaggaacacagccacgaccaatggaaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaattt |
117 |
Q |
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| T |
49391769 |
atcattgttttaaggaacacagccacgaccaatgggaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagctcaataaaattt |
49391670 |
T |
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| Q |
118 |
tgttcaacttctcgatttgatgaacatgtcacacgtgagagaggatgacgaatctgacacttttctacaacaattctaacttattggctttcagttttga |
217 |
Q |
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| T |
49391669 |
tgttcaacttctcgatttgatgaacatgtcacacgcgagagaggatgacgaatctgtcacttttctgcaacaattttagcttattggctttcagttttaa |
49391570 |
T |
|
| Q |
218 |
ctacagttcttttatttttaaggttataaccctcatcttgtaa-aaactagttcattcacatgttgggagtattttgcttggggtttggttactatttac |
316 |
Q |
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| T |
49391569 |
ctacagttcttttcttttttaggttataaccctcatcttgtaataaattagttcattcacatgttgggagtattttgcttggggtttggttactatttac |
49391470 |
T |
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| Q |
317 |
caggaatagtgaggaaacccaaacatctggtgttcgtcactacatttg |
364 |
Q |
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| T |
49391469 |
caggaatagtgaggaaacccaaacatctggttttcgtcactacatttg |
49391422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 8542065 - 8542126
Alignment:
| Q |
53 |
aaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
114 |
Q |
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| T |
8542065 |
aaaaatgaaacactcaatggttcctgcaaggcccgccacccaatgacattagcccaataaaa |
8542126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 8607304 - 8607365
Alignment:
| Q |
53 |
aaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
114 |
Q |
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| T |
8607304 |
aaaaatgaaacactcaatggttcctgcaaggcccgccacccaatgacattagcccaataaaa |
8607365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 24881890 - 24881814
Alignment:
| Q |
38 |
agccacgaccaatggaaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
114 |
Q |
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| T |
24881890 |
agccacgactaatggaagaatgaaccactcaatggttcctgcaagacccgccacctagtgacattaacccaataaaa |
24881814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 3929121 - 3929175
Alignment:
| Q |
60 |
aaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
114 |
Q |
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| T |
3929121 |
aaccactcaatggttcctgcaaggcccgccacctagtgacattagcccaataaaa |
3929175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 6021087 - 6021149
Alignment:
| Q |
45 |
accaatggaaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagccc |
107 |
Q |
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| T |
6021087 |
accaattgaaaaatgaaccactcaatggttcctgcaaggccctccacctaatggcactagccc |
6021149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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