View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_48 (Length: 399)
Name: NF8902A_low_48
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 38 - 391
Target Start/End: Complemental strand, 52030994 - 52030641
Alignment:
| Q |
38 |
gcttaattacctgcgtagtgagaacaagaatccaactggtaagaaaggtaatcttcctgtaataaaatacacgaatgatatcaacaatactgagagcata |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52030994 |
gcttaattacctgcgtagtgagaacaagaatccaactggtaagaaaggtaatcttcctgtaataaaatacacgaatgatatcaacaatactgagagcata |
52030895 |
T |
|
| Q |
138 |
agcagtgccactcccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgttctttcacgttaaaaggacccggatttaacgaaaactctctc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52030894 |
agcagtgccactcccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgctctttcacgttaaaaggacccggatttaacgaaaactctctc |
52030795 |
T |
|
| Q |
238 |
tctccaaaaccaatgatccgaaacttttttgtaggaagcaccttagccatgaatcgaccaataggaagcgttgcaacctgaattgttatcattgtaacca |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52030794 |
tctccaaaaccaatgatccgaaacttttttgtaggaagcaccttagccatgaatcgaccaataggaagcgttgcaacctgaattgttatcattgtaaccg |
52030695 |
T |
|
| Q |
338 |
ttaatggttgggttctgtaaatgaaaaatgtgtttatgtaagaaagcaacacca |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52030694 |
ttaatggttgggttctgtaaatgaaaaatgtgtttatgtaagaaagcaacacca |
52030641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 36900340 - 36900259
Alignment:
| Q |
150 |
cccaaacgcagcaccagcatttgcaaacatggaaataagcacgtgttctttcacgttaaaaggacccggatttaacgaaaac |
231 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||| || ||||| |||| |||||| ||||| || || ||||||||| |
|
|
| T |
36900340 |
cccaaacgcagccccagcatttgcaaatatggtaataagaacatgttccttcatgttaaacggacctgggttaaacgaaaac |
36900259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University