View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_51 (Length: 393)
Name: NF8902A_low_51
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 382
Target Start/End: Complemental strand, 1831845 - 1831476
Alignment:
| Q |
6 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
104 |
Q |
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||||||||||||||| | |||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
|
| Q |
105 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatct |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||| |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatct |
1831646 |
T |
|
| Q |
205 |
caaattctctcatcatttgtcttttgaaatttttctatctatgctatgttgcttccagttaccactaagtcattaacatatagacatataaatatcatat |
304 |
Q |
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|||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| || |
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| T |
1831645 |
caaattctgtcatcatttgtcttttg-aatttttctgtctatgttatgttgcttccagttaacactaagtcattaacatatagacagataagtatcagat |
1831547 |
T |
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| Q |
305 |
cattaccttttttattcttcacacgcacacacacataaaccatattcaactttgcatttgataaa-tttttgttgaact |
382 |
Q |
| |
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||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||| ||||||||||||| |
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| T |
1831546 |
cattaccttttttattctttacacacacac--------accatattcagctttgcatttgataaattttttgttgaact |
1831476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 327
Target Start/End: Original strand, 15490418 - 15490686
Alignment:
| Q |
60 |
ggtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatattt--cttctggtgcaccactaaacattatgaagttttagt |
157 |
Q |
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|||||| ||| ||||||| | | |||||||||||||||||| | ||||| || ||| ||| |||||| |||| | |||||| || | |||||| | | |
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| T |
15490418 |
ggtgtatatgtaggattgcaactcatcatgttgaatctcttaagaatatcaataacatgtttatcttctgatgcatccctaaaccttttaaagtttaatt |
15490517 |
T |
|
| Q |
158 |
gaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcatcatttgtcttttgaaatttttctatctatgctatgttgct |
257 |
Q |
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||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||| |||| || |||| ||| ||| ||| | |
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| T |
15490518 |
gaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcatttgtcttatgaa-ttcttctttctcaattatattggt |
15490616 |
T |
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| Q |
258 |
tccagttaccactaagtcattaacatatagacatataaatatcatatcattaccttttttattcttcaca |
327 |
Q |
| |
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|||||||||||| || |||| |||||||||||| |||| |||| || ||||||| |||||||||||| |
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| T |
15490617 |
tccagttaccacgaaatcatcaacatatagacaaataagcatcagatttctacctttgttattcttcaca |
15490686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 16944109 - 16944280
Alignment:
| Q |
118 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
217 |
Q |
| |
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||||||||||||||| |||||| | | ||| |||| ||||||||| || |||||||| ||| |||||||||||||| ||| || |||||| |||| |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
|
| Q |
218 |
catttgtcttttgaaat-ttttctatctatgctatgttgcttccagttaccactaagtcattaacatataga |
288 |
Q |
| |
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||||||||||||||| | || | |||||| |||| ||||||| |||||||||||| | || |||||||||| |
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|
| T |
16944209 |
catttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaaattatcaacatataga |
16944280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 17014774 - 17014945
Alignment:
| Q |
118 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
217 |
Q |
| |
|
||||||||||||||| |||||| | | ||| |||| ||||||||| || |||||||| ||| |||||||||||||| ||| || |||||| |||| |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
|
| Q |
218 |
catttgtcttttgaaat-ttttctatctatgctatgttgcttccagttaccactaagtcattaacatataga |
288 |
Q |
| |
|
||||||||||||||| | || | |||||| |||| ||||||| |||||||||||| | || |||||||||| |
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|
| T |
17014874 |
catttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaaattatcaacatataga |
17014945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 9817073 - 9816931
Alignment:
| Q |
90 |
ttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttc |
189 |
Q |
| |
|
||||||||||| ||||||| | | ||||||||||||| ||||| |||||| | | ||| |||||||||||||| || |||| ||||||| ||||| ||| |
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|
| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
|
| Q |
190 |
ccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
232 |
Q |
| |
|
||||| | ||| ||||| ||| ||||||||||||||||||| |
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|
| T |
9816973 |
ccaaaccagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
61 |
gtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaa |
160 |
Q |
| |
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||||||||||||||||| || || ||||||||| ||||| | ||||| | |||||| |||||||| ||| |||| || || |||||||||||||| |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
|
| Q |
161 |
ttccatcccaaggaaatattttaactttcc |
190 |
Q |
| |
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|||||| |||||||| ||| |||||||||| |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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