View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_55 (Length: 385)
Name: NF8902A_low_55
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 373
Target Start/End: Original strand, 7440462 - 7440833
Alignment:
| Q |
7 |
ctaagactgttagactttcttt-gtaaaggaatcgtaccccacaatcaaagatatttaggtgttagaaggttcatttgccctcaatcctccttctagcac |
105 |
Q |
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| T |
7440462 |
ctaagactgttatactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgctaaaaggttcatttgccctcaatcctccttctagcac |
7440561 |
T |
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| Q |
106 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgtta----aatgg |
201 |
Q |
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| T |
7440562 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaattaatgg |
7440661 |
T |
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| Q |
202 |
ctagagtgaattgaggaaatcaagcgttataaattatctttaattttgatttctaagttgttaaagtatacctaatataagcaaaacattaaagaaggca |
301 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||| |
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| T |
7440662 |
ctagagtgaattgaggaaatcaagtgttataaattatctttaattttgatttctaagttgttaaagtttacctaatatatgcaagacattaaataaggca |
7440761 |
T |
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| Q |
302 |
agtgcctgttgtattattgctcatcagaggtaatattgttaactgaatcatagcagtaatactatatatatt |
373 |
Q |
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|| | | || ||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
7440762 |
aggggcggtagtagtatggctcatcagaggtaatattgttaactgaatcatagtagtaatattatatatatt |
7440833 |
T |
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