View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_56 (Length: 383)
Name: NF8902A_low_56
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_56 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 357
Target Start/End: Original strand, 39956376 - 39956731
Alignment:
| Q |
6 |
aaaccaaaccactctaaactctccaaacccctt-actataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
104 |
Q |
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| T |
39956376 |
aaaccaaaccactctaaactctcgaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
39956475 |
T |
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| Q |
105 |
aaaaaccaaacactcaacacaaccacactcttcactcat---cttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
201 |
Q |
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| T |
39956476 |
aaaaaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
39956575 |
T |
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| Q |
202 |
aacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgttgcagaaacaggttacggttagggcaatagtagtgagtatcatgtt |
301 |
Q |
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| T |
39956576 |
aacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggctagggcaatagtcgtgagtatcatgct |
39956675 |
T |
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| Q |
302 |
atcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
357 |
Q |
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| T |
39956676 |
atcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 74 - 383
Target Start/End: Original strand, 39940766 - 39941076
Alignment:
| Q |
74 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcactcatcttcatcgtaacatggcttcagaacctca |
172 |
Q |
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| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctca |
39940865 |
T |
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| Q |
173 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgttgcagaaacaggttacg |
272 |
Q |
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| T |
39940866 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttact |
39940965 |
T |
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| Q |
273 |
gttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
372 |
Q |
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| T |
39940966 |
gttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
39941065 |
T |
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| Q |
373 |
cggctgggttg |
383 |
Q |
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| T |
39941066 |
cggctgggttg |
39941076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 195 - 379
Target Start/End: Complemental strand, 28750890 - 28750706
Alignment:
| Q |
195 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgttgcagaaacaggttacggttagggcaatagtagtgagta |
294 |
Q |
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||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| ||| |||||||||||| || |||||||||||| | | |||| |
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| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
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| Q |
295 |
tcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgg |
379 |
Q |
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| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctgg |
28750706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 220 - 383
Target Start/End: Complemental strand, 28742020 - 28741857
Alignment:
| Q |
220 |
ttgaaaaggggtttgaaggaaaatctgttccttcgttgcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcacttt |
319 |
Q |
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||||||| ||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||| || | |||||| ||||||| || || |||||||| || |
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| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
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| Q |
320 |
cattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttg |
383 |
Q |
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| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttg |
28741857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 7963737 - 7963661
Alignment:
| Q |
307 |
tgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttg |
383 |
Q |
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| T |
7963737 |
tgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttg |
7963661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 378
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
223 |
aaaaggggtttgaaggaaaatctgttccttcgttgcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcat |
322 |
Q |
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|||| ||||||||||||||||| |||||| || ||| || | || ||||||| ||| ||| | |||||| || | || | || |||||||| ||||| |
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| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
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| Q |
323 |
tgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
378 |
Q |
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| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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