View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_58 (Length: 378)
Name: NF8902A_low_58
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 3568028 - 3568385
Alignment:
| Q |
21 |
aatccttgtggggcggcagggtttttctttcaaagtagatatgcagtatgagcgcatgcctcttttttgtcatcattgttatgttattggtcataacatt |
120 |
Q |
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| T |
3568028 |
aatccttgtggagcggcagggtttttctttcaaagtagatatgcagtatgagcgcatgcctcttttttgtcatcattgttatgtcattggtcataacatt |
3568127 |
T |
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| Q |
121 |
tcaaattgtaagtggttgcatcccagagccttctcgcgacaaagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtg |
220 |
Q |
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| T |
3568128 |
tcaaattgtaagtggttgtatcccagagccttctcgcgacaaagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtg |
3568227 |
T |
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| Q |
221 |
gaagtgacaacacctttgtccactgcgactgttgatgttaatcaagaaaaatgttcttcgtctgatgttccttccaaggatatttccgccaactccttta |
320 |
Q |
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| T |
3568228 |
gaagtgacaacacctttgtccactgcgactgttgatgttaatcaagaaaaatcttcttcgtctgatgttccttccaaggatatttccgccaactccttta |
3568327 |
T |
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| Q |
321 |
gcttcaccttgaagaatgtgtcggatcatattcctcaaggtagacttcctcgtcctga |
378 |
Q |
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| T |
3568328 |
gcttcaccttgaagaatgtgtcggatcatattcctcaaggtagacttcctcgtcctga |
3568385 |
T |
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