View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_6 (Length: 540)
Name: NF8902A_low_6
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 284 - 528
Target Start/End: Original strand, 39605215 - 39605459
Alignment:
| Q |
284 |
caatttaaacaattaaagtatgttccgtcacttgtcaaagactttattttgagtctaatttgatgtctttgtggcatatctttggcggttgtgggttatt |
383 |
Q |
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| T |
39605215 |
caatttaaacaattaaaatatgttctgacacatgtcaaagactttattttgagtctaatttgatgtctttgtggcatatctttggcggttgtgggttatt |
39605314 |
T |
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| Q |
384 |
tttgacggattttcatatgtctgggctcgaattggtgttggttctcgaaagggcatttctcaatttcataccacttttgtgttgtcattgtgtgtatcac |
483 |
Q |
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| T |
39605315 |
tttgacggattttcatatgtctgggcttgaattggtgttggttctcgaaagggcgtttctcaatttcataccacttttgtgttgtcattgtgtgtatcac |
39605414 |
T |
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| Q |
484 |
ttgttagggtttgtttcggtggtttgataccctcagtgttatatt |
528 |
Q |
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| T |
39605415 |
ctgttagggtttgtttcggtggtttgacaccctcaatgttatatt |
39605459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 39604914 - 39605056
Alignment:
| Q |
62 |
aaaacccaaaaagagaaa--gaaaataattcaaatttcctcaaaattgaatgaatctttatgttttgtcactttcatcttcttctaaattaaactctaaa |
159 |
Q |
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| T |
39604914 |
aaaacccaaaaagagaaaaagaaaataattcaaatttcctcaaaattgaatgaatctttatgttttgtcactttcatcttcttctaaattaaactctaaa |
39605013 |
T |
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| Q |
160 |
atcaaagtccaaattctcattgaactctaaatttatcaaacct |
202 |
Q |
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| T |
39605014 |
atcaaaggccaaattctcattgaactctaaatttatcaaacct |
39605056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 39605094 - 39605200
Alignment:
| Q |
240 |
ctgaacaattaaagtatctagattttacttaaataggttagatgcaatttaaacaattaaagtatgttccgtcacttgtcaaagactttattttgagtct |
339 |
Q |
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| T |
39605094 |
ctgaacaattaaagtatctagattttacttaaataggttaggtgcaatttaaacaattaaagtatgttccgtcatttgtcaaagactttattttgagtct |
39605193 |
T |
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| Q |
340 |
aatttga |
346 |
Q |
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||||||| |
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| T |
39605194 |
aatttga |
39605200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 39601523 - 39601584
Alignment:
| Q |
6 |
agattcatcttcttcattcttaactttatcatc---tttatcatgttcgtaatcttcctaaa |
64 |
Q |
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| T |
39601523 |
agattcatcttcttcattcttaactttatcatctaatttatcatgttcgtcatcttcctaaa |
39601584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 39606864 - 39606810
Alignment:
| Q |
149 |
taaactctaaaatcaaagt-ccaaattctcattgaactctaaatttatcaaacct |
202 |
Q |
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| T |
39606864 |
taaactccaaaatcaaagttccaaattctcattaaactataaatttgtcaaacct |
39606810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 357 - 528
Target Start/End: Original strand, 20125232 - 20125395
Alignment:
| Q |
357 |
gcatatctttggcggttgtgggttatttttgacggattttcatatgtctgggctcgaattggtgttggttctcgaaagggcatttctcaatttcatacca |
456 |
Q |
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| T |
20125232 |
gcatatctttggcggttgtgggttctttttgacggattttcttatgtctgagcttggatatgtgttggttctcaaaagggc--------gttccatacca |
20125323 |
T |
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| Q |
457 |
cttttgtgttgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctcagtgttatatt |
528 |
Q |
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| T |
20125324 |
cttttgtgttgttatcgtgtgtatcatccgatagggtttgtttcagtggtttggcaccctcagtgttgtatt |
20125395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 366 - 528
Target Start/End: Original strand, 34967263 - 34967415
Alignment:
| Q |
366 |
tggcggttgtgggttatttttgacggattttcatatgtctgggctcgaattggtgttggttctcgaaagggcatttctcaatttcataccacttttgtgt |
465 |
Q |
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| T |
34967263 |
tggcggttgtgggttctttttgacggattttcgtatgtctgtgcttggattggtgttggttctcaaaagggc--------gtttcataccacttttgtgt |
34967354 |
T |
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| Q |
466 |
tgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctcagtgttatatt |
528 |
Q |
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||| || |||||||| ||||||||||||||| ||||||||| ||||||| |||| |||| |
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| T |
34967355 |
tgttat--cgtgtatcatctgttagggtttgttttggtggtttggcaccctcaatgttgtatt |
34967415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 419 - 519
Target Start/End: Original strand, 33473179 - 33473279
Alignment:
| Q |
419 |
tgttggttctcgaaagggcatttctcaatttcataccacttttgtgttgtcattgtgtgtatcacttgttagggtttgtttcggtggtttgataccctca |
518 |
Q |
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|||||||||||||||||| |||||||||||| || |||||||||||||| || ||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
33473179 |
tgttggttctcgaaagggagtttctcaatttcgtatcacttttgtgttgttatcgtgtgtatcacccgttagggtttgtttcagtggtttggcaccctca |
33473278 |
T |
|
| Q |
519 |
g |
519 |
Q |
| |
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| T |
33473279 |
g |
33473279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 454 - 509
Target Start/End: Complemental strand, 3331120 - 3331065
Alignment:
| Q |
454 |
ccacttttgtgttgtcattgtgtgtatcacttgttagggtttgtttcggtggtttg |
509 |
Q |
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| T |
3331120 |
ccacttgtgtgttgttattgtgtgtatcactcgttagggtttgtttcggtggtttg |
3331065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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