View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_62 (Length: 374)

Name: NF8902A_low_62
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_62
NF8902A_low_62
[»] chr4 (8 HSPs)
chr4 (23-135)||(23423629-23423741)
chr4 (23-135)||(24298003-24298115)
chr4 (23-135)||(23448129-23448241)
chr4 (23-135)||(23875212-23875324)
chr4 (23-135)||(26827764-26827876)
chr4 (292-360)||(23423898-23423962)
chr4 (312-355)||(23875006-23875049)
chr4 (23-57)||(23446775-23446809)
[»] chr2 (2 HSPs)
chr2 (23-132)||(41244624-41244733)
chr2 (32-132)||(41257572-41257672)
[»] chr8 (1 HSPs)
chr8 (32-135)||(35961546-35961649)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 23423629 - 23423741
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatgg 122  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||    
T  23423629 aggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccggaaattgaagaccagctctgatgg 23423728  T
Q  123 atcttgtcaccga 135  Q
    |||||||||||||    
T  23423729 atcttgtcaccga 23423741  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 24298115 - 24298003
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatgg 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |    
T  24298115 aggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattg 24298016  T
Q  123 atcttgtcaccga 135  Q
    |||||||||||||    
T  24298015 atcttgtcaccga 24298003  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 23448129 - 23448241
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatgg 122  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |    
T  23448129 aggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattg 23448228  T
Q  123 atcttgtcaccga 135  Q
    |||||||||||||    
T  23448229 atcttgtcaccga 23448241  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 23875324 - 23875212
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatgg 122  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |    
T  23875324 aggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattg 23875225  T
Q  123 atcttgtcaccga 135  Q
    |||||||||||||    
T  23875224 atcttgtcaccga 23875212  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 26827876 - 26827764
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatgg 122  Q
    ||||| || |||||||| || |||||||||||||| ||||  |||||||||| ||| |  ||||||||||| |||||||| || || || ||||||||||    
T  26827876 aggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactgggaattggagtccggctctgatgg 26827777  T
Q  123 atcttgtcaccga 135  Q
    |||||||||||||    
T  26827776 atcttgtcaccga 26827764  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 23423898 - 23423962
Alignment:
Q  292 tcagagtgttgcaatgtgattgatttatataggaaagagttttcgtgtttctattggctaatgatgtcc 360  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| ||||    
T  23423898 tcagagtgttgcaatgtgat----ttatataggaaagagttttcgtgtttctattggctaatgaggtcc 23423962  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 23875049 - 23875006
Alignment:
Q  312 tgatttatataggaaagagttttcgtgtttctattggctaatga 355  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  23875049 tgatttatataggaaagggttttcgtgtttctattggataatga 23875006  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 23446775 - 23446809
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagc 57  Q
    ||||||||||||||||| |||||||||||||||||    
T  23446775 aggtatactggagcaccggttccgacacgctgagc 23446809  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 41244624 - 41244733
Alignment:
Q  23 aggtatactggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatgg 122  Q
    ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||    
T  41244624 aggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatgg 41244723  T
Q  123 atcttgtcac 132  Q
    |||| |||||    
T  41244724 atctggtcac 41244733  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 41257672 - 41257572
Alignment:
Q  32 ggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatggatcttgtca 131  Q
    |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||| ||||| || ||||||||||||||| ||||||||||||    
T  41257672 ggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacgaccgattcttccgactggaaattgaagaccagctctggtggatcttgtca 41257573  T
Q  132 c 132  Q
    |    
T  41257572 c 41257572  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 35961649 - 35961546
Alignment:
Q  32 ggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagaccagctctgatggatcttgtca 131  Q
    |||||||| || |||||||| ||||| ||||  |||||||||||||| |  ||||||||||| |||||||| ||||| || |||||||| |||||||| |    
T  35961649 ggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacggccgattcttcccactgggaattgaagtccggctctgattgatcttgtta 35961550  T
Q  132 ccga 135  Q
    ||||    
T  35961549 ccga 35961546  T

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