View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_65 (Length: 370)

Name: NF8902A_low_65
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_65
NF8902A_low_65
[»] chr3 (4 HSPs)
chr3 (22-184)||(3586705-3586866)
chr3 (33-184)||(9789599-9789750)
chr3 (240-359)||(3586922-3587039)
chr3 (240-359)||(9789426-9789543)
[»] chr8 (2 HSPs)
chr8 (44-177)||(44504580-44504713)
chr8 (240-359)||(44504770-44504887)
[»] chr4 (5 HSPs)
chr4 (240-359)||(10014212-10014329)
chr4 (240-359)||(10021353-10021470)
chr4 (99-184)||(31678513-31678598)
chr4 (22-88)||(31678375-31678441)
chr4 (291-342)||(31678703-31678753)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 3586705 - 3586866
Alignment:
Q  22 ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttctt 121  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||  |||| |||||||||||| |||||    
T  3586705 ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt 3586803  T
Q  122 aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggta 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3586804 aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggta 3586866  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 9789750 - 9789599
Alignment:
Q  33 ttcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttccca 132  Q
    |||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||  |||| |||||||||||| ||||||||||||||||    
T  9789750 ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca 9789651  T
Q  133 catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggta 184  Q
    ||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  9789650 catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggta 9789599  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 359
Target Start/End: Original strand, 3586922 - 3587039
Alignment:
Q  240 aatcatgttatcaaatcagtattctatgtacttctgttttcnnnnnnnnngtttgttattcaatcaataccatacttttttatgtttttgtgattgtaag 339  Q
    |||||||||||||||||||||||||||| |||| |||||||         |||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  3586922 aatcatgttatcaaatcagtattctatgcacttttgttttcttttttt--gtttgttattcaatcaataccatacttttttatgcttttgtgattgcaag 3587019  T
Q  340 ttgcatgttcctttattcat 359  Q
    ||||||||||||||||||||    
T  3587020 ttgcatgttcctttattcat 3587039  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 9789543 - 9789426
Alignment:
Q  240 aatcatgttatcaaatcagtattctatgtacttctgttttcnnnnnnnnngtttgttattcaatcaataccatacttttttatgtttttgtgattgtaag 339  Q
    |||||||||||||||| | ||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  9789543 aatcatgttatcaaattaatattctatgcacttctgttttcttttttt--gtttgttattcaatcaataccatacttttttatgcttttgtgattgcaag 9789446  T
Q  340 ttgcatgttcctttattcat 359  Q
    ||||||||||||||||||||    
T  9789445 ttgcatgttcctttattcat 9789426  T

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Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 44504580 - 44504713
Alignment:
Q  44 tgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttcccacatctcttcaa 143  Q
    |||||| |||||||||||||| |||||| |||| |||||||||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||||    
T  44504580 tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa 44504679  T
Q  144 cctagctgctgctgttgtcagacttctcagatct 177  Q
    | ||||||||||||||||||||||| ||||||||    
T  44504680 cttagctgctgctgttgtcagacttttcagatct 44504713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 359
Target Start/End: Original strand, 44504770 - 44504887
Alignment:
Q  240 aatcatgttatcaaatcagtattctatgtacttctgttttcnnnnnnnnngtttgttattcaatcaataccatacttttttatgtttttgtgattgtaag 339  Q
    ||||||||||||||||| |||||||||| ||||| ||||||         |||||||||||||| || |||||||||||||||| ||||||||||| |||    
T  44504770 aatcatgttatcaaatcggtattctatgcacttcggttttcttttttt--gtttgttattcaattaaaaccatacttttttatgcttttgtgattgcaag 44504867  T
Q  340 ttgcatgttcctttattcat 359  Q
    ||||||||||||||||||||    
T  44504868 ttgcatgttcctttattcat 44504887  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 10014329 - 10014212
Alignment:
Q  240 aatcatgttatcaaatcagtattctatgtacttctgttttcnnnnnnnnngtttgttattcaatcaataccatacttttttatgtttttgtgattgtaag 339  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||| ||||| ||||||||||| |||    
T  10014329 aatcatgttatcaaatcagtattctatgtacttctgttttcttttttt--gtttgttattcaatcaatatcatactttattatgcttttgtgattgcaag 10014232  T
Q  340 ttgcatgttcctttattcat 359  Q
    ||||||||||||||||||||    
T  10014231 ttgcatgttcctttattcat 10014212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 10021470 - 10021353
Alignment:
Q  240 aatcatgttatcaaatcagtattctatgtacttctgttttcnnnnnnnnngtttgttattcaatcaataccatacttttttatgtttttgtgattgtaag 339  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||| ||||| ||||||||||| |||    
T  10021470 aatcatgttatcaaatcagtattctatgtacttctgttttcttttttt--gtttgttattcaatcaatatcatactttattatgcttttgtgattgcaag 10021373  T
Q  340 ttgcatgttcctttattcat 359  Q
    ||||||||||||||||||||    
T  10021372 ttgcatgttcctttattcat 10021353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 31678513 - 31678598
Alignment:
Q  99 tatagatataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggta 184  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  31678513 tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggta 31678598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
Q  22 ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattt 88  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||||||||| | |||||||||||    
T  31678375 ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt 31678441  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 31678703 - 31678753
Alignment:
Q  291 tttgttattcaatcaataccatacttttttatgtttttgtgattgtaagttg 342  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  31678703 tttgttattcaatcaataccatac-tttttatgcttttgtgattgcaagttg 31678753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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