View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_74 (Length: 357)
Name: NF8902A_low_74
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_74 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 29056524 - 29056174
Alignment:
| Q |
7 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
106 |
Q |
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| T |
29056524 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
29056425 |
T |
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| Q |
107 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
206 |
Q |
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| T |
29056424 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
29056325 |
T |
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| Q |
207 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagtatgttgagtggagtaag |
306 |
Q |
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| T |
29056324 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagcatgttgagtggagtaag |
29056225 |
T |
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| Q |
307 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcacca |
357 |
Q |
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| T |
29056224 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcacca |
29056174 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 2811253 - 2811322
Alignment:
| Q |
42 |
catttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaa |
111 |
Q |
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| T |
2811253 |
catttgaaacagtttttagattattttcagattctcaattttttaagaatttgtaacaaacagatgaaaa |
2811322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 32848736 - 32848815
Alignment:
| Q |
274 |
agtggagaagcacagtatgttgagtggagtaagatccaaacgcctactgatgaagtggttgtaccttatgacagtttggc |
353 |
Q |
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| T |
32848736 |
agtggtgaagcgcagcatgtagaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggc |
32848815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 21479534 - 21479629
Alignment:
| Q |
32 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatg-aaaattttgaaaagtgatt |
126 |
Q |
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| T |
21479534 |
aacagcttctcatttgaagctgtttttagattttttttagattctgatttttttaaaaagctgtaacaaatggatgcaaaattcttaaaagtgatt |
21479629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 42429723 - 42429792
Alignment:
| Q |
32 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaa |
101 |
Q |
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| T |
42429723 |
aacagcttctcatttgaaactgtttttagattatttttagattctgatttttttaaaaagctgtaacaaa |
42429792 |
T |
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