View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_76 (Length: 356)
Name: NF8902A_low_76
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 29486829 - 29486663
Alignment:
| Q |
11 |
atgaaaacgaaaggtaaatccatggggaccacgaatggtgtaaagaggctaactatacatttgaaagacttaggtagagtcaatgtcttggccctatagt |
110 |
Q |
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| T |
29486829 |
atgaaaacgaaaggtaaatctatggggaccacgaatggtgtaaagaggctaactatacatttgaaagacttaggtagagtcaatgtcttgcccctatagt |
29486730 |
T |
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| Q |
111 |
tacttaaaaataattgcatgccaaataattaatatccatttttaaaaaagactagagacctcactttc |
178 |
Q |
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| T |
29486729 |
tacttaaaaataattgcatgccaaataattaatatccattttta-aaaagactagagacctcactttc |
29486663 |
T |
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Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 167 - 352
Target Start/End: Complemental strand, 29486634 - 29486455
Alignment:
| Q |
167 |
gacctcactttcatttttatattgaacgatatgtctttttcttttgaaccttacactttttaggtgcaaaaatttaatatgaaaatgaaaatttcctcta |
266 |
Q |
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| T |
29486634 |
gacctcactttcatttttatattgaacaatatgtctttt------gaaccttacactttttaggtgcaaaaatttaatatgaaaatgaaaatctcctcta |
29486541 |
T |
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| Q |
267 |
tcatgtgcatagtgtgtgtccacaaatgtttgggaggacaaagttttatttattttcttccttctcatttatggaacttggacgtg |
352 |
Q |
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| T |
29486540 |
tcatgtgcatagtgtgtgtccacaaatggttgggaggacaaagttttatttattttcttccttctcatttatggaacttggacgtg |
29486455 |
T |
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