View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_77 (Length: 354)
Name: NF8902A_low_77
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 37217753 - 37217616
Alignment:
| Q |
151 |
ccatgtattcatacacaaggaatagaaatccctcgacacaatatccaattaagtgtacctatatatatggacataaccacatatagatataggttacaaa |
250 |
Q |
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| T |
37217753 |
ccatgtattcatacacaaggaatagaaatccctcgacacaatatccaatcaagtgtacctatatatatggacataaccacatatagatataggttacaaa |
37217654 |
T |
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| Q |
251 |
attactgttacattaaagaatatagtataaacaccaaa |
288 |
Q |
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| T |
37217653 |
attactgttacattaaagaatatagtataaacaccaaa |
37217616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 37232396 - 37232263
Alignment:
| Q |
151 |
ccatgtattcatacacaaggaatagaaatccctcgacacaatatccaattaagtgtacctatatatatggacataaccacatatagatataggttacaaa |
250 |
Q |
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| T |
37232396 |
ccatgtattcatacacaagaaatagaaatccctcaacacaatatccaatcaagtgtacctatat----ggacataacaacagatagatataggttacaaa |
37232301 |
T |
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| Q |
251 |
attactgttacattaaagaatatagtataaacaccaaa |
288 |
Q |
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| T |
37232300 |
attactattacattagagaatatagtataaacaacaaa |
37232263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 37223452 - 37223319
Alignment:
| Q |
151 |
ccatgtattcatacacaaggaatagaaatccctcgacacaatatccaattaagtgtacctatatatatggacataaccacatatagatataggttacaaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||| | | |||||||||||||||||| |
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| T |
37223452 |
ccatgtattcatacacaaggaatagaaatccctcaacacaatatccaatcaagtgtacct----atatgaacataacaatagatagatataggttacaaa |
37223357 |
T |
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| Q |
251 |
attactgttacattaaagaatatagtataaacaccaaa |
288 |
Q |
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| T |
37223356 |
attactgatacattaaagaatataatataaacagcaaa |
37223319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 37385571 - 37385631
Alignment:
| Q |
153 |
atgtattcatacacaaggaatagaaatccctcgacacaatatccaattaagtgtacctata |
213 |
Q |
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| T |
37385571 |
atgtattcataaacaaggaatagagatccctcaacacaatatccaatcaagtgtacctata |
37385631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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