View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_8 (Length: 539)
Name: NF8902A_low_8
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Complemental strand, 31658979 - 31658583
Alignment:
| Q |
15 |
atggacatcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaa |
114 |
Q |
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| T |
31658979 |
atggccatcacacttgcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaa |
31658880 |
T |
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| Q |
115 |
cattccaattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattct |
214 |
Q |
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| T |
31658879 |
cattccaattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattct |
31658780 |
T |
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| Q |
215 |
tctcaaaatcaattgttctcatcagataacctcatatcatgtaactttgaattttgttttgattatgtgagacatgccactatgctatcatcgattgaat |
314 |
Q |
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| T |
31658779 |
tctcaaaatcaattgttctcatcagataacctcatatcatgtaactttgaagtttattttgattatttgagacgtgccactatgctatcatcgattgaat |
31658680 |
T |
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| Q |
315 |
catttgaatttgagaatgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
411 |
Q |
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| T |
31658679 |
catttgaatttgagaatgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
31658583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 31650298 - 31650553
Alignment:
| Q |
82 |
tgactcttctatattactcagttttgataa---caacattccaattaaagaagaaaactcgtttccaccatcacc---attgccatttcttgcatctaca |
175 |
Q |
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| T |
31650298 |
tgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcgaccatcaccaccattgccacttcttgcatctaca |
31650397 |
T |
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| Q |
176 |
atagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacctcatatcatgtaactttgaattttgttttg |
275 |
Q |
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| T |
31650398 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctccaattatgcgattttgatgtttattttg |
31650497 |
T |
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| Q |
276 |
attatgtgagacatgccactatgctatcatcgattgaatcatttgaatttgagaat |
331 |
Q |
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| T |
31650498 |
attatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgagaat |
31650553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 31657244 - 31657342
Alignment:
| Q |
20 |
catcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
118 |
Q |
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| T |
31657244 |
catcacacttgcaaaagctcttaccattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
154 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
198 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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