View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_81 (Length: 350)

Name: NF8902A_low_81
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_81
NF8902A_low_81
[»] chr6 (11 HSPs)
chr6 (10-305)||(14024097-14024392)
chr6 (49-147)||(14046176-14046274)
chr6 (83-171)||(14106451-14106539)
chr6 (49-147)||(13474180-13474278)
chr6 (95-139)||(13910619-13910663)
chr6 (75-139)||(14109243-14109307)
chr6 (235-304)||(14106330-14106399)
chr6 (240-305)||(13863775-13863840)
chr6 (69-137)||(13894205-13894274)
chr6 (83-147)||(14083495-14083557)
chr6 (49-118)||(14021506-14021575)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 14024392 - 14024097
Alignment:
Q  10 ataatactttaactttagacctgtcatatatacctacatttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactt 109  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  14024392 ataatactttaactttagacctctcatatatacttacatttatctttcatgatattgtttttcaagtttcaacttttttaaaattttaaattttagactt 14024293  T
Q  110 tatatctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttcaataaaggctactggatagtgtgttgtggatcatattaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14024292 tatatctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttcaatcaaggctactggatagtgtgttgtggatcatattaa 14024193  T
Q  210 ggtgtgcaagaaagtccttctccacgaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgat 305  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14024192 ggtgtgcaagaaagtccttctccacgaagataaatagtatctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgat 14024097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 14046274 - 14046176
Alignment:
Q  49 ttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatatagg 147  Q
    ||||||||||||||||||| ||||||||| ||| |||| ||||| |||||||||| |||||| ||||||| | |||||| |||||||||||||||||||    
T  14046274 ttatctttcatgatattgtgtttcaagttacaagttttctaaaaatttatattttggactttgtatctaatgaggttaacacttaaactattatatagg 14046176  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 14106539 - 14106451
Alignment:
Q  83 ttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttca 171  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||| |||||||||  |||| |||||||    
T  14106539 ttttttaaaaatttatattttagactatatatctaaggtggttaacactcaaactattatatagggtggcaaaatggtgtgcatcttca 14106451  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 13474180 - 13474278
Alignment:
Q  49 ttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatatagg 147  Q
    ||||||||||||||||||| ||||||||| ||| |||| ||  | |||||||||| |||||||||||||| |   |||| |||||||||||||||||||    
T  13474180 ttatctttcatgatattgtgtttcaagttacaagttttctaggaatttatattttggactttatatctaatgaccttaacacttaaactattatatagg 13474278  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 13910663 - 13910619
Alignment:
Q  95 ttatattttagactttatatctaaagtggttaatacttaaactat 139  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  13910663 ttatattttagactttatatctaaagtggttaacacttaaactat 13910619  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 14109307 - 14109243
Alignment:
Q  75 gtttcaacttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactat 139  Q
    ||||||| |||| ||||| ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  14109307 gtttcaagttttctaaaaatttatattttagactttatatataaagaggttaacacttaaactat 14109243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 14106399 - 14106330
Alignment:
Q  235 gaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatga 304  Q
    |||||| ||| |||||||||||||  |||| | |||||||||||||| | ||||||||||||||||||||    
T  14106399 gaagatgaatggtttctcctcttttatgaatgttttgtgaattattttcattgtaactctaggaagatga 14106330  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 13863775 - 13863840
Alignment:
Q  240 taaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgat 305  Q
    ||||| |||||||||||||  |||| | |||||||||||||| | |||||||||||| ||||||||    
T  13863775 taaatggtttctcctcttttatgaatgttttgtgaattatttgcattgtaactctagtaagatgat 13863840  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 13894205 - 13894274
Alignment:
Q  69 tttcaagtttcaacttttttaaaattttatattttagactttat-atctaaagtggttaatacttaaact 137  Q
    |||||||||||||| ||||| | | || |||||||||||||||| ||||||||||||||| | |||||||    
T  13894205 tttcaagtttcaacattttttataattcatattttagactttataatctaaagtggttaagaattaaact 13894274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 14083557 - 14083495
Alignment:
Q  83 ttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatatagg 147  Q
    |||| ||||| || ||||||||||  |||||||||||| |||||| |||||||||||||||||||    
T  14083557 ttttctaaaaattaatattttaga--ttatatctaaagaggttaacacttaaactattatatagg 14083495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 14021575 - 14021506
Alignment:
Q  49 ttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaa 118  Q
    |||||||| |||||||| | ||||||||| ||| |||| ||| | ||| ||||| |||||||||||||||    
T  14021575 ttatctttgatgatattatgtttcaagttacaagttttctaataatttgtatttcagactttatatctaa 14021506  T

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