View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_9 (Length: 523)
Name: NF8902A_low_9
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 523
Target Start/End: Original strand, 49471351 - 49471861
Alignment:
| Q |
12 |
agatggacatcaaataagctatgagatggatttgcagcaatcaaaagcaaaaaagttggtgagggtaccaatgagctggaacaactcaatggaattgatt |
111 |
Q |
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| T |
49471351 |
agatgggcatcaaataagctatgagatggatttgcagcaatcaaaagcaaaaaagttggtgagggtaccaatgagctggaacaactcaatggaattgatt |
49471450 |
T |
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| Q |
112 |
agtgtcccaacttgagcacacatccaaaacagtcatctacatttgcagctcctctttcgagaaaaacttaggagaaaaacnnnnnnnnngggagctaaag |
211 |
Q |
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| T |
49471451 |
agtgtcccaacttgagcacacatccaaaacagtcatctacatttgcagctcctctttcgagaaaaacttaggagaaaaactttttttttgggagctaaag |
49471550 |
T |
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| Q |
212 |
ttcaagcatgatcctcttgttttgctagttgcaacaaccacttcatttgctcaatcatatgatggcaatcaagctaagtacttgaacatatttggattct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49471551 |
ttcaagcatgatcctcttgttttgctagttgcaacaaccacttcatttgctcaatcatatgatggcaatcaagctaagtacttgaacatatttggattct |
49471650 |
T |
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| Q |
312 |
ctttgtctctttccaagtaatcccgagaaatcaaatcttcaatccgctttttaattgctttgacatcaggctgcacaattacataccatataaaatttaa |
411 |
Q |
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| T |
49471651 |
ctttgtctctttccaagtaatcccgagaaatcaaatcttcaatccgctttttaattgctttgacatcaggctgcacaattacataccatataaaatttaa |
49471750 |
T |
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| Q |
412 |
gattggagggaggtaagaaaacacaaggttacattnnnnnnnntgttatataagagtatgaaccttaaacatgcgacccaactgctcaacgcactccata |
511 |
Q |
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| T |
49471751 |
gatttgagggaggtaaaaaaacacaaggttacatt-aaaaaagtgttatataagagtatgaaccttaaacatgcgacccaactgctcaacgcactccata |
49471849 |
T |
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| Q |
512 |
actaactgttga |
523 |
Q |
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| T |
49471850 |
actaactgttga |
49471861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 279 - 384
Target Start/End: Original strand, 14672631 - 14672736
Alignment:
| Q |
279 |
atcaagctaagtacttgaacatatttggattctctttgtctctttccaagtaatcccgagaaatcaaatcttcaatccgctttttaattgctttgacatc |
378 |
Q |
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||||||| ||||||||||||| ||||| ||| |||||||||||||||| ||| || ||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
14672631 |
atcaagccaagtacttgaacaaatttgcattatctttgtctctttccaggtagtctcgagagatcaaatcttcaatccgcttcttaattgccttgacatc |
14672730 |
T |
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| Q |
379 |
aggctg |
384 |
Q |
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| T |
14672731 |
aggctg |
14672736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 14672821 - 14672870
Alignment:
| Q |
473 |
accttaaacatgcgacccaactgctcaacgcactccataactaactgttg |
522 |
Q |
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| T |
14672821 |
accttaaacatgcggcctaactgctcaacgcactccatcactaactgttg |
14672870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 2582433 - 2582492
Alignment:
| Q |
207 |
taaagttcaagcatgatcctcttgttttgctagttgcaacaaccacttcatttgctcaat |
266 |
Q |
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| T |
2582433 |
taaagatcaggcatgatcatattgttttgatagttgcaacaacaacttcatttgcccaat |
2582492 |
T |
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