View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_91 (Length: 342)
Name: NF8902A_low_91
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_91 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 9805341 - 9805016
Alignment:
| Q |
17 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9805341 |
gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata |
9805242 |
T |
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| Q |
117 |
tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa |
216 |
Q |
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| T |
9805241 |
tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa |
9805142 |
T |
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| Q |
217 |
caaaatgaaaagcgccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaa |
316 |
Q |
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| T |
9805141 |
caaaatgaaaagcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaa |
9805042 |
T |
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| Q |
317 |
aataaaatccatgtatttattacata |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9805041 |
aataaaatccatgtatttattacata |
9805016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 76 - 342
Target Start/End: Complemental strand, 9818211 - 9817941
Alignment:
| Q |
76 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
173 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
174 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcgccagtgatgagcaggaagactcttccccaaaagtaagatgggg |
273 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg |
9818012 |
T |
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| Q |
274 |
aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacata |
342 |
Q |
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| T |
9818011 |
aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacata |
9817941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 9806455 - 9806777
Alignment:
| Q |
17 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa |
114 |
Q |
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|||||||||||||| || |||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||| |
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| T |
9806455 |
gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa |
9806554 |
T |
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| Q |
115 |
tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttg |
214 |
Q |
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| T |
9806555 |
tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttg |
9806642 |
T |
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| Q |
215 |
aacaaaatgaaaag--cgccagt---gatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggat |
306 |
Q |
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| T |
9806643 |
aacaaaatgaagaggaggccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctaccc |
9806741 |
T |
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| Q |
307 |
aataaattaaaataaaatccatgtatttattacata |
342 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
9806742 |
aataaaataaaataaaatccatgtatttattacata |
9806777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 12285 - 11950
Alignment:
| Q |
14 |
atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa |
112 |
Q |
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|||||||||||||| || || ||||||||||||||| ||||||||| |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| | |
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| T |
12285 |
atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca |
12186 |
T |
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| Q |
113 |
aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt |
212 |
Q |
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| T |
12185 |
attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt |
12087 |
T |
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| Q |
213 |
tgaacaaaatgaaaag-----cgccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtgg |
304 |
Q |
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| T |
12086 |
tgaacaaaatgaaaaggatgccactagtgataacgaggaagactctt-ccctaaagtaagatggggaatttgaagagtagaataagaaatctatgtgtac |
11988 |
T |
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| Q |
305 |
ataataaattaaaataaaatccatgtatttattacata |
342 |
Q |
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| T |
11987 |
ataataaaataaaataaaattcatgtatttattacata |
11950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
42 |
aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
133 |
Q |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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