View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_94 (Length: 333)
Name: NF8902A_low_94
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 5826978 - 5827291
Alignment:
| Q |
1 |
ggactgaatatcaaaactttcaaagtaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaaca |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826978 |
ggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaaca |
5827077 |
T |
|
| Q |
101 |
tagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5827078 |
tagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccaggtggtta |
5827177 |
T |
|
| Q |
201 |
caatacatcggtaggcgaaagaggcacacagtaatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgagaaaccctagaatactttta |
300 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5827178 |
caatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatactttta |
5827277 |
T |
|
| Q |
301 |
cttgatgaggcaac |
314 |
Q |
| |
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|||||||||||||| |
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| T |
5827278 |
cttgatgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 5768532 - 5768835
Alignment:
| Q |
8 |
atatcaaaactttcaaagtaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagctta |
107 |
Q |
| |
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|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768532 |
atataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagctta |
5768631 |
T |
|
| Q |
108 |
tggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaataca |
207 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||| | || |
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| T |
5768632 |
tggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaaatggttatgacacc |
5768731 |
T |
|
| Q |
208 |
tcggtaggcgaaagaggcacacagtaatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgagaaaccctagaatacttttacttgatg |
307 |
Q |
| |
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|| || || ||||||||||||||| |||||| ||||| || || ||||| || ||||||||||| || ||| |||||| | ||||||||| ||||| | |
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| T |
5768732 |
tctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaatacttttgcttgacg |
5768831 |
T |
|
| Q |
308 |
aggc |
311 |
Q |
| |
|
|||| |
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| T |
5768832 |
aggc |
5768835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 5829913 - 5829742
Alignment:
| Q |
11 |
tcaaaactttcaaagtaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatgg |
110 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5829913 |
tcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatgg |
5829814 |
T |
|
| Q |
111 |
caaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataag |
182 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
5829813 |
aaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataag |
5829742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
216 |
cgaaagaggcacacagtaatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgagaaaccctagaatacttttacttgatgaggcaac |
314 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 29327430 - 29327124
Alignment:
| Q |
8 |
atatcaaaactttcaaagtaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagctta |
107 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29327430 |
atatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgccaacatagctta |
29327331 |
T |
|
| Q |
108 |
tggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaataca |
207 |
Q |
| |
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||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| | || |
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|
| T |
29327330 |
tggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctgatggttatgacact |
29327231 |
T |
|
| Q |
208 |
tcggtaggcgaaagaggcacacagtaatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgagaaaccctagaatacttttacttgatg |
307 |
Q |
| |
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|| || ||||||||||||||||| ||| || ||||| || || || || || ||||||||||| || ||| |||||||| ||||||||| ||||||| |
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| T |
29327230 |
tctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttgatg |
29327131 |
T |
|
| Q |
308 |
aggcaac |
314 |
Q |
| |
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||||||| |
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|
| T |
29327130 |
aggcaac |
29327124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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